ECODEvolutionary Classification of Protein Domains

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PDB 5MNJ

X-RAY DIFFRACTION2.16 Å8 chains8 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AUbiquitin-conjugating enzyme E2 D2view chain

1 domain

e5mnjA1(A:2-147)

Chain BPolyubiquitin-Bview chain

1 domain

e5mnjB1(B:2-76)

Chain CE3 ubiquitin-protein ligase Mdm2view chain

1 domain

e5mnjC1(C:429-491)

Chain DProtein Mdm4view chain

1 domain

e5mnjD1(D:428-490)

Chain EUbiquitin-conjugating enzyme E2 D2view chain

1 domain

e5mnjE1(E:2-147)

Chain FPolyubiquitin-Bview chain

1 domain

e5mnjF1(F:1-76)

Chain GE3 ubiquitin-protein ligase Mdm2view chain

1 domain

e5mnjG1(G:428-491)

Chain HProtein Mdm4view chain

1 domain

e5mnjH1(H:427-490)

All Domains (8)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5mnjA1	A:2-147	UQ_con	216 → 216.1 → 216.1.1
2	B	e5mnjB1	B:2-76	ubiquitin	221 → 221.1 → 221.1.1
3	C	e5mnjC1	C:429-491	zf-C3HC4_3	376 → 376.1 → 376.1.1
4	D	e5mnjD1	D:428-490	zf-C3HC4_3	376 → 376.1 → 376.1.1
5	E	e5mnjE1	E:2-147	UQ_con	216 → 216.1 → 216.1.1
6	F	e5mnjF1	F:1-76	ubiquitin	221 → 221.1 → 221.1.1
7	G	e5mnjG1	G:428-491	zf-C3HC4_3	376 → 376.1 → 376.1.1
8	H	e5mnjH1	H:427-490	zf-C3HC4_3	376 → 376.1 → 376.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors