ECODEvolutionary Classification of Protein Domains

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PDB 5NEM

ELECTRON MICROSCOPY6 chains7 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 1O PanAsia VP1view chain

1 domain

e5nem11(1:1-210)

Chain 2O PanAsia VP2view chain

1 domain

e5nem21(2:5-218)

Chain 3O PanAsia VP3view chain

1 domain

e5nem31(3:1-220)

Chain AIntegrin alpha-Vview chain

2 domains

e5nemA1(A:439-594)e5nemA2(A:1-439)

Chain BIntegrin beta-6view chain

2 domains

e5nemB1(B:69-471)e5nemB2(B:5-73)

All Domains (7)

#	Chain	Domain ID	Range	Family	Classification
1	1	e5nem11	1:1-210	Rhv	10 → 10.2 → 10.2.1
2	2	e5nem21	2:5-218	Rhv	10 → 10.2 → 10.2.1
3	3	e5nem31	3:1-220	Rhv	10 → 10.2 → 10.2.1
4	A	e5nemA1	A:439-594	Integrin_A_Ig_1	11 → 11.1 → 11.1.1
5	A	e5nemA2	A:1-439	FG-GAP	5 → 5.1 → 5.1.4
6	B	e5nemB1	B:69-471	2006.1.6.0	2006 → 2006.1 → 2006.1.6
7	B	e5nemB2	B:5-73	PSI_integrin	355 → 355.1 → 355.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors