ECODEvolutionary Classification of Protein Domains

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PDB 5NIF

X-RAY DIFFRACTION3.00 Å30 chains28 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 1Proteasome subunit beta type-6view chain

1 domain

e5nif11(1:-9-213)

Chain 2Proteasome subunit beta type-7view chain

1 domain

e5nif21(2:-8-225)

Chain AProteasome subunit alpha type-1view chain

1 domain

e5nifA1(A:11-251)

Chain BProteasome subunit alpha type-2view chain

1 domain

e5nifB1(B:1-250)

Chain CProteasome subunit alpha type-3view chain

1 domain

e5nifC1(C:2-245)

Chain DProteasome subunit alpha type-4view chain

1 domain

e5nifD1(D:3-243)

Chain EProteasome subunit alpha type-5view chain

1 domain

e5nifE1(E:8-250)

Chain FProteasome subunit alpha type-6view chain

1 domain

e5nifF1(F:3-234)

Chain GProbable proteasome subunit alpha type-7view chain

1 domain

e5nifG1(G:4-247)

Chain HProteasome subunit beta type-1view chain

1 domain

e5nifH1(H:1-196)

Chain IProteasome subunit beta type-2view chain

1 domain

e5nifI1(I:1-222)

Chain JProteasome subunit beta type-3view chain

1 domain

e5nifJ1(J:-8-196)

Chain KProteasome subunit beta type-4view chain

1 domain

e5nifK1(K:0-195)

Chain LProteasome subunit beta type-5view chain

1 domain

e5nifL1(L:1-212)

Chain MProteasome subunit beta type-6view chain

1 domain

e5nifM1(M:-9-213)

Chain NProteasome subunit beta type-7view chain

1 domain

e5nifN1(N:-7-225)

Chain OProteasome subunit alpha type-1view chain

1 domain

e5nifO1(O:11-251)

Chain PProteasome subunit alpha type-2view chain

1 domain

e5nifP1(P:1-250)

Chain QProteasome subunit alpha type-3view chain

1 domain

e5nifQ1(Q:2-245)

Chain RProteasome subunit alpha type-4view chain

1 domain

e5nifR1(R:3-243)

Chain SProteasome subunit alpha type-5view chain

1 domain

e5nifS1(S:9-250)

Chain TProteasome subunit alpha type-6view chain

1 domain

e5nifT1(T:3-234)

Chain UProbable proteasome subunit alpha type-7view chain

1 domain

e5nifU1(U:4-247)

Chain VProteasome subunit beta type-1view chain

1 domain

e5nifV1(V:1-196)

Chain WProteasome subunit beta type-2view chain

1 domain

e5nifW1(W:1-222)

Chain XProteasome subunit beta type-3view chain

1 domain

e5nifX1(X:-8-196)

Chain YProteasome subunit beta type-4view chain

1 domain

e5nifY1(Y:-1-195)

Chain ZProteasome subunit beta type-5view chain

1 domain

e5nifZ1(Z:1-212)

All Domains (28)

#	Chain	Domain ID	Range	Family	Classification
1	1	e5nif11	1:-9-213	Proteasome	210 → 210.1 → 210.1.1
2	2	e5nif21	2:-8-225	Proteasome	210 → 210.1 → 210.1.1
3	A	e5nifA1	A:11-251	Proteasome,Proteasome_A_N	210 → 210.1 → 210.1.1
4	B	e5nifB1	B:1-250	Proteasome,Proteasome_A_N	210 → 210.1 → 210.1.1
5	C	e5nifC1	C:2-245	Proteasome,Proteasome_A_N	210 → 210.1 → 210.1.1
6	D	e5nifD1	D:3-243	Proteasome,Proteasome_A_N	210 → 210.1 → 210.1.1
7	E	e5nifE1	E:8-250	Proteasome,Proteasome_A_N	210 → 210.1 → 210.1.1
8	F	e5nifF1	F:3-234	Proteasome,Proteasome_A_N	210 → 210.1 → 210.1.1
9	G	e5nifG1	G:4-247	Proteasome,Proteasome_A_N	210 → 210.1 → 210.1.1
10	H	e5nifH1	H:1-196	Proteasome	210 → 210.1 → 210.1.1
11	I	e5nifI1	I:1-222	Proteasome,Pr_beta_C	210 → 210.1 → 210.1.1
12	J	e5nifJ1	J:-8-196	Proteasome	210 → 210.1 → 210.1.1
13	K	e5nifK1	K:0-195	Proteasome	210 → 210.1 → 210.1.1
14	L	e5nifL1	L:1-212	Proteasome	210 → 210.1 → 210.1.1
15	M	e5nifM1	M:-9-213	Proteasome	210 → 210.1 → 210.1.1
16	N	e5nifN1	N:-7-225	Proteasome	210 → 210.1 → 210.1.1
17	O	e5nifO1	O:11-251	Proteasome,Proteasome_A_N	210 → 210.1 → 210.1.1
18	P	e5nifP1	P:1-250	Proteasome,Proteasome_A_N	210 → 210.1 → 210.1.1
19	Q	e5nifQ1	Q:2-245	Proteasome,Proteasome_A_N	210 → 210.1 → 210.1.1
20	R	e5nifR1	R:3-243	Proteasome,Proteasome_A_N	210 → 210.1 → 210.1.1
21	S	e5nifS1	S:9-250	Proteasome,Proteasome_A_N	210 → 210.1 → 210.1.1
22	T	e5nifT1	T:3-234	Proteasome,Proteasome_A_N	210 → 210.1 → 210.1.1
23	U	e5nifU1	U:4-247	Proteasome,Proteasome_A_N	210 → 210.1 → 210.1.1
24	V	e5nifV1	V:1-196	Proteasome	210 → 210.1 → 210.1.1
25	W	e5nifW1	W:1-222	Proteasome,Pr_beta_C	210 → 210.1 → 210.1.1
26	X	e5nifX1	X:-8-196	Proteasome	210 → 210.1 → 210.1.1
27	Y	e5nifY1	Y:-1-195	Proteasome	210 → 210.1 → 210.1.1
28	Z	e5nifZ1	Z:1-212	Proteasome	210 → 210.1 → 210.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors