ECODEvolutionary Classification of Protein Domains

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PDB 5O04

X-RAY DIFFRACTION2.30 Å6 chains6 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ACapsid proteinview chain

1 domain

e5o04A1(A:226-538)

Chain BCapsid proteinview chain

1 domain

e5o04B1(B:224-538)

Chain CNanobody (VHH) Nano-85view chain

1 domain

e5o04C1(C:1-123)

Chain DNanobody (VHH) Nano-85view chain

1 domain

e5o04D1(D:1-119)

Chain ENanobody (VHH) Nano-26view chain

1 domain

e5o04E1(E:1-114)

Chain FNanobody (VHH) Nano-26view chain

1 domain

e5o04F1(F:1-111)

All Domains (6)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5o04A1	A:226-538	Calici_coat_C	10 → 10.2 → 10.2.1
2	B	e5o04B1	B:224-538	Calici_coat_C	10 → 10.2 → 10.2.1
3	C	e5o04C1	C:1-123	V-set	11 → 11.1 → 11.1.1
4	D	e5o04D1	D:1-119	V-set	11 → 11.1 → 11.1.1
5	E	e5o04E1	E:1-114	V-set	11 → 11.1 → 11.1.1
6	F	e5o04F1	F:1-111	V-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors