ECODEvolutionary Classification of Protein Domains

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PDB 5T35

X-RAY DIFFRACTION2.70 Å8 chains10 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ABromodomain-containing protein 4view chain

1 domain

e5t35A1(A:349-459)

Chain BTranscription elongation factor B polypeptide 2view chain

1 domain

e5t35B1(B:1-104)

Chain CTranscription elongation factor B polypeptide 1view chain

1 domain

e5t35C1(C:16-112)

Chain DVon Hippel-Lindau disease tumor suppressorview chain

2 domains

e5t35D1(D:154-209)e5t35D2(D:61-153)

Chain EBromodomain-containing protein 4view chain

1 domain

e5t35E1(E:349-459)

Chain FTranscription elongation factor B polypeptide 2view chain

1 domain

e5t35F1(F:1-104)

Chain GTranscription elongation factor B polypeptide 1view chain

1 domain

e5t35G1(G:16-112)

Chain HVon Hippel-Lindau disease tumor suppressorview chain

2 domains

e5t35H1(H:154-207)e5t35H2(H:61-153)

All Domains (10)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5t35A1	A:349-459	Bromodomain	633 → 633.1 → 633.1.1
2	B	e5t35B1	B:1-104	ubiquitin	221 → 221.1 → 221.1.1
3	C	e5t35C1	C:16-112	Skp1_POZ	226 → 226.1 → 226.1.1
4	D	e5t35D1	D:154-209	VHL_C	4215 → 4215.1 → 4215.1.1
5	D	e5t35D2	D:61-153	VHL	11 → 11.1 → 11.1.4
6	E	e5t35E1	E:349-459	Bromodomain	633 → 633.1 → 633.1.1
7	F	e5t35F1	F:1-104	ubiquitin	221 → 221.1 → 221.1.1
8	G	e5t35G1	G:16-112	Skp1_POZ	226 → 226.1 → 226.1.1
9	H	e5t35H1	H:154-207	VHL_C	4215 → 4215.1 → 4215.1.1
10	H	e5t35H2	H:61-153	VHL	11 → 11.1 → 11.1.4

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors