ECODEvolutionary Classification of Protein Domains

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PDB 5UK4

X-RAY DIFFRACTION3.20 Å44 chains40 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain aAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4a1(a:1-125)

Chain ANucleoproteinview chain

1 domain

e5uk4A1(A:2-422)

Chain bAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4b1(b:1-125)

Chain BNucleoproteinview chain

1 domain

e5uk4B1(B:2-422)

Chain cAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4c1(c:1-125)

Chain CNucleoproteinview chain

1 domain

e5uk4C1(C:2-422)

Chain dAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4d1(d:1-125)

Chain DNucleoproteinview chain

1 domain

e5uk4D1(D:2-422)

Chain eAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4e1(e:1-125)

Chain ENucleoproteinview chain

1 domain

e5uk4E1(E:2-422)

Chain fAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4f1(f:1-125)

Chain FNucleoproteinview chain

1 domain

e5uk4F1(F:2-422)

Chain gAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4g1(g:1-125)

Chain GNucleoproteinview chain

1 domain

e5uk4G1(G:2-422)

Chain hAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4h1(h:1-125)

Chain HNucleoproteinview chain

1 domain

e5uk4H1(H:2-422)

Chain iAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4i1(i:1-125)

Chain INucleoproteinview chain

1 domain

e5uk4I1(I:2-422)

Chain jAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4j1(j:1-125)

Chain JNucleoproteinview chain

1 domain

e5uk4J1(J:2-422)

Chain kAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4k1(k:1-125)

Chain KNucleoproteinview chain

1 domain

e5uk4K1(K:2-422)

Chain lAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4l1(l:1-125)

Chain LNucleoproteinview chain

1 domain

e5uk4L1(L:2-422)

Chain mAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4m1(m:1-125)

Chain MNucleoproteinview chain

1 domain

e5uk4M1(M:2-422)

Chain nAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4n1(n:1-125)

Chain NNucleoproteinview chain

1 domain

e5uk4N1(N:2-422)

Chain oAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4o1(o:1-125)

Chain ONucleoproteinview chain

1 domain

e5uk4O1(O:2-422)

Chain pAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4p1(p:1-125)

Chain PNucleoproteinview chain

1 domain

e5uk4P1(P:2-422)

Chain qAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4q1(q:1-125)

Chain QNucleoproteinview chain

1 domain

e5uk4Q1(Q:2-422)

Chain rAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4r1(r:1-125)

Chain RNucleoproteinview chain

1 domain

e5uk4R1(R:2-422)

Chain sAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4s1(s:1-125)

Chain SNucleoproteinview chain

1 domain

e5uk4S1(S:2-422)

Chain tAnti-vesicular stomatitis virus N VHHview chain

1 domain

e5uk4t1(t:1-125)

Chain TNucleoproteinview chain

1 domain

e5uk4T1(T:2-422)

All Domains (40)

#	Chain	Domain ID	Range	Family	Classification
1	a	e5uk4a1	a:1-125	V-set	11 → 11.1 → 11.1.1
2	A	e5uk4A1	A:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
3	b	e5uk4b1	b:1-125	V-set	11 → 11.1 → 11.1.1
4	B	e5uk4B1	B:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
5	c	e5uk4c1	c:1-125	V-set	11 → 11.1 → 11.1.1
6	C	e5uk4C1	C:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
7	d	e5uk4d1	d:1-125	V-set	11 → 11.1 → 11.1.1
8	D	e5uk4D1	D:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
9	e	e5uk4e1	e:1-125	V-set	11 → 11.1 → 11.1.1
10	E	e5uk4E1	E:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
11	f	e5uk4f1	f:1-125	V-set	11 → 11.1 → 11.1.1
12	F	e5uk4F1	F:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
13	g	e5uk4g1	g:1-125	V-set	11 → 11.1 → 11.1.1
14	G	e5uk4G1	G:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
15	h	e5uk4h1	h:1-125	V-set	11 → 11.1 → 11.1.1
16	H	e5uk4H1	H:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
17	i	e5uk4i1	i:1-125	V-set	11 → 11.1 → 11.1.1
18	I	e5uk4I1	I:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
19	j	e5uk4j1	j:1-125	V-set	11 → 11.1 → 11.1.1
20	J	e5uk4J1	J:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
21	k	e5uk4k1	k:1-125	V-set	11 → 11.1 → 11.1.1
22	K	e5uk4K1	K:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
23	l	e5uk4l1	l:1-125	V-set	11 → 11.1 → 11.1.1
24	L	e5uk4L1	L:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
25	m	e5uk4m1	m:1-125	V-set	11 → 11.1 → 11.1.1
26	M	e5uk4M1	M:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
27	n	e5uk4n1	n:1-125	V-set	11 → 11.1 → 11.1.1
28	N	e5uk4N1	N:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
29	o	e5uk4o1	o:1-125	V-set	11 → 11.1 → 11.1.1
30	O	e5uk4O1	O:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
31	p	e5uk4p1	p:1-125	V-set	11 → 11.1 → 11.1.1
32	P	e5uk4P1	P:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
33	q	e5uk4q1	q:1-125	V-set	11 → 11.1 → 11.1.1
34	Q	e5uk4Q1	Q:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
35	r	e5uk4r1	r:1-125	V-set	11 → 11.1 → 11.1.1
36	R	e5uk4R1	R:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
37	s	e5uk4s1	s:1-125	V-set	11 → 11.1 → 11.1.1
38	S	e5uk4S1	S:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1
39	t	e5uk4t1	t:1-125	V-set	11 → 11.1 → 11.1.1
40	T	e5uk4T1	T:2-422	Rhabdo_ncap	566 → 566.2 → 566.2.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors