ECODEvolutionary Classification of Protein Domains

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PDB 5VCO

X-RAY DIFFRACTION2.74 Å6 chains10 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ALIGHT CHAIN OF FAB FRAGMENT OF 10B9 ANTIBODYview chain

2 domains

e5vcoA1(A:109-211)e5vcoA2(A:1-108)

Chain BHEAVY CHAIN OF FAB FRAGMENT OF 10B9 ANTIBODYview chain

2 domains

e5vcoB1(B:1-122)e5vcoB2(B:123-222)

Chain CLIGHT CHAIN OF FAB FRAGMENT OF 10B9 ANTIBODYview chain

2 domains

e5vcoC1(C:109-211)e5vcoC2(C:1-108)

Chain DHEAVY CHAIN OF FAB FRAGMENT OF 10B9 ANTIBODYview chain

2 domains

e5vcoD1(D:123-222)e5vcoD2(D:1-122)

Chain EPEPTIDASE 1view chain

1 domain

e5vcoE1(E:1-222)

Chain FPEPTIDASE 1view chain

1 domain

e5vcoF1(F:1-222)

All Domains (10)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5vcoA1	A:109-211	C1-set	11 → 11.1 → 11.1.1
2	A	e5vcoA2	A:1-108	V-set	11 → 11.1 → 11.1.1
3	B	e5vcoB1	B:1-122	V-set	11 → 11.1 → 11.1.1
4	B	e5vcoB2	B:123-222	C1-set	11 → 11.1 → 11.1.1
5	C	e5vcoC1	C:109-211	C1-set	11 → 11.1 → 11.1.1
6	C	e5vcoC2	C:1-108	V-set	11 → 11.1 → 11.1.1
7	D	e5vcoD1	D:123-222	C1-set	11 → 11.1 → 11.1.1
8	D	e5vcoD2	D:1-122	V-set	11 → 11.1 → 11.1.1
9	E	e5vcoE1	E:1-222	Peptidase_C1	219 → 219.1 → 219.1.1
10	F	e5vcoF1	F:1-222	Peptidase_C1	219 → 219.1 → 219.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors