ECODEvolutionary Classification of Protein Domains

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PDB 5VVJ

X-RAY DIFFRACTION3.28 Å8 chains6 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ACRISPR-associated endonuclease Cas1view chain

1 domain

e5vvjA1(A:16-280)

Chain BCRISPR-associated endonuclease Cas1view chain

1 domain

e5vvjB1(B:2-275)

Chain CCRISPR-associated endonuclease Cas1view chain

1 domain

e5vvjC1(C:16-277)

Chain DCRISPR-associated endonuclease Cas1view chain

1 domain

e5vvjD1(D:4-275)

Chain ECRISPR-associated endoribonuclease Cas2view chain

1 domain

e5vvjE1(E:2-94)

Chain FCRISPR-associated endoribonuclease Cas2view chain

1 domain

e5vvjF1(F:1-95)

All Domains (6)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5vvjA1	A:16-280	Cas_Cas1	3239 → 3239.1 → 3239.1.1
2	B	e5vvjB1	B:2-275	Cas_Cas1	3239 → 3239.1 → 3239.1.1
3	C	e5vvjC1	C:16-277	Cas_Cas1	3239 → 3239.1 → 3239.1.1
4	D	e5vvjD1	D:4-275	Cas_Cas1	3239 → 3239.1 → 3239.1.1
5	E	e5vvjE1	E:2-94	Cas_Cas2CT1978	304 → 304.56 → 304.56.1
6	F	e5vvjF1	F:1-95	Cas_Cas2CT1978	304 → 304.56 → 304.56.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors