ECODEvolutionary Classification of Protein Domains

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PDB 5VZW

X-RAY DIFFRACTION2.28 Å6 chains6 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AUbiquitin-conjugating enzyme E2 D2view chain

1 domain

e5vzwA1(A:2-147)

Chain BUbiquitin-conjugating enzyme E2 D2view chain

1 domain

e5vzwB1(B:2-147)

Chain CUbiquitinview chain

1 domain

e5vzwC1(C:-1-76)

Chain DUbiquitinview chain

1 domain

e5vzwD1(D:0-76)

Chain FE3 ubiquitin-protein ligase TRIM23view chain

1 domain

e5vzwF1(F:28-104)

Chain GE3 ubiquitin-protein ligase TRIM23view chain

1 domain

e5vzwG1(G:28-104)

All Domains (6)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5vzwA1	A:2-147	UQ_con	216 → 216.1 → 216.1.1
2	B	e5vzwB1	B:2-147	UQ_con	216 → 216.1 → 216.1.1
3	C	e5vzwC1	C:-1-76	ubiquitin	221 → 221.1 → 221.1.1
4	D	e5vzwD1	D:0-76	ubiquitin	221 → 221.1 → 221.1.1
5	F	e5vzwF1	F:28-104	zf-RING_UBOX	376 → 376.1 → 376.1.1
6	G	e5vzwG1	G:28-104	zf-RING_UBOX	376 → 376.1 → 376.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors