ECODEvolutionary Classification of Protein Domains

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PDB 5YGK

X-RAY DIFFRACTION2.05 Å8 chains8 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ACyclolavandulyl diphosphate synthaseview chain

1 domain

e5ygkA1(A:1-210)

Chain BCyclolavandulyl diphosphate synthaseview chain

1 domain

e5ygkB1(B:1-208)

Chain CCyclolavandulyl diphosphate synthaseview chain

1 domain

e5ygkC1(C:1-217)

Chain DCyclolavandulyl diphosphate synthaseview chain

1 domain

e5ygkD1(D:1-208)

Chain ECyclolavandulyl diphosphate synthaseview chain

1 domain

e5ygkE1(E:1-208)

Chain FCyclolavandulyl diphosphate synthaseview chain

1 domain

e5ygkF1(F:2-209)

Chain GCyclolavandulyl diphosphate synthaseview chain

1 domain

e5ygkG1(G:2-209)

Chain HCyclolavandulyl diphosphate synthaseview chain

1 domain

e5ygkH1(H:2-217)

All Domains (8)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5ygkA1	A:1-210	Prenyltransf	7534 → 7534.1 → 7534.1.1
2	B	e5ygkB1	B:1-208	Prenyltransf	7534 → 7534.1 → 7534.1.1
3	C	e5ygkC1	C:1-217	Prenyltransf	7534 → 7534.1 → 7534.1.1
4	D	e5ygkD1	D:1-208	Prenyltransf	7534 → 7534.1 → 7534.1.1
5	E	e5ygkE1	E:1-208	Prenyltransf	7534 → 7534.1 → 7534.1.1
6	F	e5ygkF1	F:2-209	Prenyltransf	7534 → 7534.1 → 7534.1.1
7	G	e5ygkG1	G:2-209	Prenyltransf	7534 → 7534.1 → 7534.1.1
8	H	e5ygkH1	H:2-217	Prenyltransf	7534 → 7534.1 → 7534.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors