ECODEvolutionary Classification of Protein Domains

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PDB 5YMW

X-RAY DIFFRACTION2.00 Å12 chains12 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AClass I histocompatibility antigen, F10 alpha chainview chain

2 domains

e5ymwA1(A:0-178)e5ymwA2(A:179-270)

Chain BBeta-2-microglobulinview chain

1 domain

e5ymwB1(B:1-98)

Chain DClass I histocompatibility antigen, F10 alpha chainview chain

2 domains

e5ymwD1(D:179-270)e5ymwD2(D:0-178)

Chain EBeta-2-microglobulinview chain

1 domain

e5ymwE1(E:1-98)

Chain GClass I histocompatibility antigen, F10 alpha chainview chain

2 domains

e5ymwG1(G:179-270)e5ymwG2(G:0-178)

Chain HBeta-2-microglobulinview chain

1 domain

e5ymwH1(H:1-98)

Chain JClass I histocompatibility antigen, F10 alpha chainview chain

2 domains

e5ymwJ1(J:179-270)e5ymwJ2(J:0-178)

Chain KBeta-2-microglobulinview chain

1 domain

e5ymwK1(K:1-98)

All Domains (12)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5ymwA1	A:0-178	MHC_I	233 → 233.1 → 233.1.1
2	A	e5ymwA2	A:179-270	C1-set	11 → 11.1 → 11.1.1
3	B	e5ymwB1	B:1-98	C1-set	11 → 11.1 → 11.1.1
4	D	e5ymwD1	D:179-270	C1-set	11 → 11.1 → 11.1.1
5	D	e5ymwD2	D:0-178	MHC_I	233 → 233.1 → 233.1.1
6	E	e5ymwE1	E:1-98	C1-set	11 → 11.1 → 11.1.1
7	G	e5ymwG1	G:179-270	C1-set	11 → 11.1 → 11.1.1
8	G	e5ymwG2	G:0-178	MHC_I	233 → 233.1 → 233.1.1
9	H	e5ymwH1	H:1-98	C1-set	11 → 11.1 → 11.1.1
10	J	e5ymwJ1	J:179-270	C1-set	11 → 11.1 → 11.1.1
11	J	e5ymwJ2	J:0-178	MHC_I	233 → 233.1 → 233.1.1
12	K	e5ymwK1	K:1-98	C1-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors