ECODEvolutionary Classification of Protein Domains

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PDB 5YOY

X-RAY DIFFRACTION2.73 Å18 chains18 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ATumor necrosis factorview chain

1 domain

e5yoyA1(A:6-159)

Chain BTumor necrosis factorview chain

1 domain

e5yoyB1(B:6-159)

Chain CTumor necrosis factorview chain

1 domain

e5yoyC1(C:6-159)

Chain DGolimumab light chain variable regionview chain

1 domain

e5yoyD1(D:1-108)

Chain EGolimumab light chain variable regionview chain

1 domain

e5yoyE1(E:1-108)

Chain FGolimumab light chain variable regionview chain

1 domain

e5yoyF1(F:1-108)

Chain GGolimumab heavy chain variable regionview chain

1 domain

e5yoyG1(G:1-126)

Chain HGolimumab heavy chain variable regionview chain

1 domain

e5yoyH1(H:1-126)

Chain IGolimumab heavy chain variable regionview chain

1 domain

e5yoyI1(I:1-125)

Chain JTumor necrosis factorview chain

1 domain

e5yoyJ1(J:6-158)

Chain KTumor necrosis factorview chain

1 domain

e5yoyK1(K:6-158)

Chain LTumor necrosis factorview chain

1 domain

e5yoyL1(L:6-158)

Chain MGolimumab light chain variable regionview chain

1 domain

e5yoyM1(M:1-108)

Chain NGolimumab light chain variable regionview chain

1 domain

e5yoyN1(N:1-108)

Chain OGolimumab light chain variable regionview chain

1 domain

e5yoyO1(O:1-108)

Chain PGolimumab heavy chain variable regionview chain

1 domain

e5yoyP1(P:1-126)

Chain QGolimumab heavy chain variable regionview chain

1 domain

e5yoyQ1(Q:1-126)

Chain RGolimumab heavy chain variable regionview chain

1 domain

e5yoyR1(R:1-126)

All Domains (18)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5yoyA1	A:6-159	TNF	10 → 10.3 → 10.3.1
2	B	e5yoyB1	B:6-159	TNF	10 → 10.3 → 10.3.1
3	C	e5yoyC1	C:6-159	TNF	10 → 10.3 → 10.3.1
4	D	e5yoyD1	D:1-108	V-set	11 → 11.1 → 11.1.1
5	E	e5yoyE1	E:1-108	V-set	11 → 11.1 → 11.1.1
6	F	e5yoyF1	F:1-108	V-set	11 → 11.1 → 11.1.1
7	G	e5yoyG1	G:1-126	V-set	11 → 11.1 → 11.1.1
8	H	e5yoyH1	H:1-126	V-set	11 → 11.1 → 11.1.1
9	I	e5yoyI1	I:1-125	V-set	11 → 11.1 → 11.1.1
10	J	e5yoyJ1	J:6-158	TNF	10 → 10.3 → 10.3.1
11	K	e5yoyK1	K:6-158	TNF	10 → 10.3 → 10.3.1
12	L	e5yoyL1	L:6-158	TNF	10 → 10.3 → 10.3.1
13	M	e5yoyM1	M:1-108	V-set	11 → 11.1 → 11.1.1
14	N	e5yoyN1	N:1-108	V-set	11 → 11.1 → 11.1.1
15	O	e5yoyO1	O:1-108	V-set	11 → 11.1 → 11.1.1
16	P	e5yoyP1	P:1-126	V-set	11 → 11.1 → 11.1.1
17	Q	e5yoyQ1	Q:1-126	V-set	11 → 11.1 → 11.1.1
18	R	e5yoyR1	R:1-126	V-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors