ECODEvolutionary Classification of Protein Domains

Home/PDB

PDB 5YPM

X-RAY DIFFRACTION2.15 Å8 chains8 ECOD domains

View in RCSB PDB

3D Structure(domains colored, ligands/nucleic acids shown)

Loading viewer...

Domains by Chain

Chain AMetallo-beta-lactamase NDM-1view chain

1 domain

e5ypmA1(A:43-270)

Chain BMetallo-beta-lactamase NDM-1view chain

1 domain

e5ypmB1(B:43-270)

Chain CMetallo-beta-lactamase NDM-1view chain

1 domain

e5ypmC1(C:43-270)

Chain DMetallo-beta-lactamase NDM-1view chain

1 domain

e5ypmD1(D:42-270)

Chain EMetallo-beta-lactamase NDM-1view chain

1 domain

e5ypmE1(E:43-270)

Chain FMetallo-beta-lactamase NDM-1view chain

1 domain

e5ypmF1(F:43-270)

Chain GMetallo-beta-lactamase NDM-1view chain

1 domain

e5ypmG1(G:43-270)

Chain HMetallo-beta-lactamase NDM-1view chain

1 domain

e5ypmH1(H:43-270)

All Domains (8)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5ypmA1	A:43-270	Lactamase_B	247 → 247.1 → 247.1.1
2	B	e5ypmB1	B:43-270	Lactamase_B	247 → 247.1 → 247.1.1
3	C	e5ypmC1	C:43-270	Lactamase_B	247 → 247.1 → 247.1.1
4	D	e5ypmD1	D:42-270	Lactamase_B	247 → 247.1 → 247.1.1
5	E	e5ypmE1	E:43-270	Lactamase_B	247 → 247.1 → 247.1.1
6	F	e5ypmF1	F:43-270	Lactamase_B	247 → 247.1 → 247.1.1
7	G	e5ypmG1	G:43-270	Lactamase_B	247 → 247.1 → 247.1.1
8	H	e5ypmH1	H:43-270	Lactamase_B	247 → 247.1 → 247.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors