ECODEvolutionary Classification of Protein Domains

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PDB 5ZWN

ELECTRON MICROSCOPY20 chains15 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain aSmall nuclear ribonucleoprotein-associated protein Bview chain

1 domain

e5zwna1(a:8-53,a:77-103)

Chain bSmall nuclear ribonucleoprotein Sm D1view chain

1 domain

e5zwnb1(b:1-119)

Chain cSmall nuclear ribonucleoprotein Sm D2view chain

1 domain

e5zwnc1(c:8-108)

Chain dSmall nuclear ribonucleoprotein Sm D3view chain

1 domain

e5zwnd1(d:5-96)

Chain eSmall nuclear ribonucleoprotein Eview chain

1 domain

e5zwne1(e:10-92)

Chain fSmall nuclear ribonucleoprotein Fview chain

1 domain

e5zwnf1(f:12-83)

Chain gSmall nuclear ribonucleoprotein Gview chain

1 domain

e5zwng1(g:2-76)

Chain SU1 small nuclear ribonucleoprotein Aview chain

2 domains

e5zwnS01(S:57-148)e5zwnS02(S:222-298)

Chain TU1 small nuclear ribonucleoprotein component PRP42view chain

1 domain

e5zwnT1(T:2-540)

Chain VProtein NAM8view chain

3 domains

e5zwnV01(V:56-156)e5zwnV02(V:157-244)e5zwnV03(V:245-265,V:298-384)

Chain yPre-mRNA-splicing ATP-dependent RNA helicase PRP28view chain

2 domains

e5zwny1(y:173-389)e5zwny2(y:390-578)

All Domains (15)

#	Chain	Domain ID	Range	Family	Classification
1	a	e5zwna1	a:8-53,a:77-103	LSM	4 → 4.1 → 4.1.1
2	b	e5zwnb1	b:1-119	LSM	4 → 4.1 → 4.1.1
3	c	e5zwnc1	c:8-108	LSM	4 → 4.1 → 4.1.1
4	d	e5zwnd1	d:5-96	LSM	4 → 4.1 → 4.1.1
5	e	e5zwne1	e:10-92	LSM	4 → 4.1 → 4.1.1
6	f	e5zwnf1	f:12-83	LSM	4 → 4.1 → 4.1.1
7	g	e5zwng1	g:2-76	LSM	4 → 4.1 → 4.1.1
8	S	e5zwnS01	S:57-148	304.9.1.0	304 → 304.9 → 304.9.1
9	S	e5zwnS02	S:222-298	RRM_1	304 → 304.9 → 304.9.1
10	T	e5zwnT1	T:2-540	HAT_PRP39_N, HAT_PRP39_C	109 → 109.4 → 109.4.1
11	V	e5zwnV01	V:56-156	304.9.1.0	304 → 304.9 → 304.9.1
12	V	e5zwnV02	V:157-244	RRM_1	304 → 304.9 → 304.9.1
13	V	e5zwnV03	V:245-265,V:298-384	RRM_1	304 → 304.9 → 304.9.1
14	y	e5zwny1	y:173-389	DEAD	2004 → 2004.1 → 2004.1.1
15	y	e5zwny2	y:390-578	Helicase_C	2004 → 2004.1 → 2004.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors