ECODEvolutionary Classification of Protein Domains

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PDB 6BNK

X-RAY DIFFRACTION3.20 Å8 chains14 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AAntigen-presenting glycoprotein CD1d1view chain

2 domains

e6bnkA1(A:8-185)e6bnkA2(A:186-279)

Chain BBeta-2-microglobulinview chain

1 domain

e6bnkB1(B:2-98)

Chain CNKT Valpha14 (MOUSE) - 2C12 TCR - Hybrid mouse variable and human constant domainsview chain

2 domains

e6bnkC1(C:118-206)e6bnkC2(C:1-117)

Chain DNKT Vbeta8.2 (MOUSE) - 2C12 TCR - hybrid mouse variable and human constant domainsview chain

2 domains

e6bnkD1(D:122-246)e6bnkD2(D:2-121)

Chain EAntigen-presenting glycoprotein CD1d1view chain

2 domains

e6bnkE1(E:8-185)e6bnkE2(E:186-279)

Chain FBeta-2-microglobulinview chain

1 domain

e6bnkF1(F:2-98)

Chain GNKT Valpha14 (MOUSE) - 2C12 TCR - Hybrid mouse variable and human constant domainsview chain

2 domains

e6bnkG1(G:1-117)e6bnkG2(G:118-206)

Chain HNKT Vbeta8.2 (MOUSE) - 2C12 TCR - hybrid mouse variable and human constant domainsview chain

2 domains

e6bnkH1(H:122-246)e6bnkH2(H:2-121)

All Domains (14)

#	Chain	Domain ID	Range	Family	Classification
1	A	e6bnkA1	A:8-185	MHC_I_3	233 → 233.1 → 233.1.1
2	A	e6bnkA2	A:186-279	C1-set	11 → 11.1 → 11.1.1
3	B	e6bnkB1	B:2-98	C1-set	11 → 11.1 → 11.1.1
4	C	e6bnkC1	C:118-206	DUF1968	11 → 11.1 → 11.1.1
5	C	e6bnkC2	C:1-117	V-set	11 → 11.1 → 11.1.1
6	D	e6bnkD1	D:122-246	C1-set	11 → 11.1 → 11.1.1
7	D	e6bnkD2	D:2-121	V-set	11 → 11.1 → 11.1.1
8	E	e6bnkE1	E:8-185	MHC_I_3	233 → 233.1 → 233.1.1
9	E	e6bnkE2	E:186-279	C1-set	11 → 11.1 → 11.1.1
10	F	e6bnkF1	F:2-98	C1-set	11 → 11.1 → 11.1.1
11	G	e6bnkG1	G:1-117	V-set	11 → 11.1 → 11.1.1
12	G	e6bnkG2	G:118-206	DUF1968	11 → 11.1 → 11.1.1
13	H	e6bnkH1	H:122-246	C1-set	11 → 11.1 → 11.1.1
14	H	e6bnkH2	H:2-121	V-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors