PDB 6GYM

ELECTRON MICROSCOPY31 chains59 ECOD domains

3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 0General transcription and DNA repair factor IIH helicase subunit XPD,General transcription and DNA repair factor IIH helicase subunit XPD,DNA repair helicase RAD3,DNA repair helicase RAD3,General transcription and DNA repair factor IIH helicase subunit XPDview chain

1 domain

e6gym03(0:503-723)

Chain 3RNA polymerase II transcription factor B subunit 3view chain

2 domains

e6gym31(3:8-79)e6gym32(3:80-145)

Chain 4General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH subunit TFB4,RNA polymerase II transcription factor B subunit 4,General transcription and DNA repair factor IIH subunit TFB4,General transcription and DNA repair factor IIH subunit TFB4view chain

2 domains

e6gym41(4:286-323)e6gym42(4:22-285)

Chain 5General transcription and DNA repair factor IIH subunit TFB5view chain

1 domain

e6gym51(5:2-67)

Chain 6General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1view chain

3 domains

e6gym61(6:308-374)e6gym62(6:375-457)e6gym63(6:123-307)

Chain 7General transcription and DNA repair factor IIH helicase subunit XPB,General transcription and DNA repair factor IIH helicase subunit XPB,DNA repair helicase RAD25,General transcription and DNA repair factor IIH helicase subunit XPB,DNA repair helicase RAD25,General transcription and DNA repair factor IIH helicase subunit XPB,General transcription and DNA repair factor IIH helicase subunit XPB,DNA repair helicase RAD25,General transcription and DNA repair factor IIH helicase subunit XPB,DNA repair helicase RAD25,General transcription and DNA repair factor IIH helicase subunit XPB,General transcription and DNA repair factor IIH helicase subunit XPB,DNA repair helicase RAD25,General transcription and DNA repair factor IIH helicase subunit XPB,DNA repair helicase RAD25,General transcription and DNA repair factor IIH helicase subunit XPB,General transcription and DNA repair factor IIH helicase subunit XPBview chain

3 domains

e6gym71(7:546-722)e6gym72(7:723-770)e6gym73(7:363-545)

Chain ADNA-directed RNA polymerase II subunit RPB1view chain

9 domains

e6gymA1(A:1142-1272)e6gymA2(A:1060-1112,A:1331-1452)e6gymA3(A:520-662)e6gymA4(A:1113-1141,A:1273-1330)e6gymA5(A:663-871)e6gymA6(A:375-435)e6gymA7(A:3-336)e6gymA8(A:872-1059)e6gymA9(A:337-374,A:436-519)

Chain BDNA-directed RNA polymerase II subunit RPB2view chain

7 domains

e6gymB1(B:1098-1223)e6gymB2(B:219-404)e6gymB3(B:542-630)e6gymB4(B:631-813)e6gymB5(B:814-850,B:975-1097)e6gymB6(B:851-974)e6gymB7(B:20-218,B:405-541)

Chain CDNA-directed RNA polymerase II subunit RPB3view chain

2 domains

e6gymC1(C:4-41,C:173-265)e6gymC2(C:42-172)

Chain DDNA-directed RNA polymerase II subunit RPB4view chain

1 domain

e6gymD1(D:24-71,D:131-221)

Chain EDNA-directed RNA polymerases I, II, and III subunit RPABC1view chain

2 domains

e6gymE1(E:144-215)e6gymE2(E:3-143)

Chain FDNA-directed RNA polymerases I, II, and III subunit RPABC2view chain

1 domain

e6gymF1(F:72-154)

Chain GDNA-directed RNA polymerase II subunit RPB7view chain

2 domains

e6gymG1(G:1-68)e6gymG2(G:69-171)

Chain HDNA-directed RNA polymerases I, II, and III subunit RPABC3view chain

1 domain

e6gymH1(H:2-146)

Chain IDNA-directed RNA polymerase II subunit RPB9view chain

2 domains

e6gymI1(I:50-117)e6gymI2(I:2-49)

Chain JDNA-directed RNA polymerases I, II, and III subunit RPABC5view chain

1 domain

e6gymJ1(J:1-65)

Chain KDNA-directed RNA polymerase II subunit RPB11view chain

1 domain

e6gymK1(K:1-112)

Chain LDNA-directed RNA polymerases I, II, and III subunit RPABC4view chain

1 domain

e6gymL1(L:26-70)

Chain MTranscription initiation factor IIBview chain

3 domains

e6gymM1(M:233-326)e6gymM2(M:67-218)e6gymM3(M:16-68)

Chain OTATA-box-binding proteinview chain

2 domains

e6gymO1(O:61-156)e6gymO2(O:157-240)

Chain QTranscription initiation factor IIF subunit alphaview chain

1 domain

e6gymQ1(Q:21-35,Q:97-142,Q:327-415)

Chain RTranscription initiation factor IIF subunit betaview chain

2 domains

e6gymR1(R:291-351)e6gymR2(R:58-138,R:207-227)

Chain UTranscription initiation factor IIA large subunit,Transcription initiation factor IIA large subunitview chain

2 domains

e6gymU1(U:2-47)e6gymU2(U:241-286)

Chain VTranscription initiation factor IIA subunit 2view chain

2 domains

e6gymV1(V:55-119)e6gymV2(V:5-54)

Chain WTranscription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit alpha,Transcription initiation factor IIE subunit alphaview chain

2 domains

e6gymW01(W:1-102,W:173-271)e6gymW02(W:103-172)

Chain XTranscription initiation factor IIE subunit betaview chain

3 domains

e6gymX1(X:250-283)e6gymX2(X:189-249)e6gymX3(X:123-188)

All Domains (59)

#	Chain	Domain ID	Range	Family	Classification
1	0	e6gym03	0:503-723	Helicase_C_2	2004 → 2004.1 → 2004.1.1
2	3	e6gym31	3:8-79	zf-C3HC4_5	376 → 376.1 → 376.1.1
3	3	e6gym32	3:80-145	MAT1	386 → 386.1 → 386.1.1
4	4	e6gym41	4:286-323	375.1.1.0	375 → 375.1 → 375.1.1
5	4	e6gym42	4:22-285	Tfb4	2006 → 2006.1 → 2006.1.6
6	5	e6gym51	5:2-67	Tfb5	4340 → 4340.1 → 4340.1.1
7	6	e6gym61	6:308-374	375.1.1.0	375 → 375.1 → 375.1.1
8	6	e6gym62	6:375-457	C1_4	376 → 376.1 → 376.1.2
9	6	e6gym63	6:123-307	Ssl1	2006 → 2006.1 → 2006.1.6
10	7	e6gym71	7:546-722	ERCC3_RAD25_C	2004 → 2004.1 → 2004.1.1
11	7	e6gym72	7:723-770	ERCC3_RAD25_C	2004 → 2004.1 → 2004.1.1
12	7	e6gym73	7:363-545	ResIII	2004 → 2004.1 → 2004.1.1
13	A	e6gymA1	A:1142-1272	RNA_pol_Rpb1_7	4955 → 4955.1 → 4955.1.1
14	A	e6gymA2	A:1060-1112,A:1331-1452	RNA_pol_Rpb1_5	4954 → 4954.1 → 4954.1.1
15	A	e6gymA3	A:520-662	RNA_pol_Rpb1_3	4959 → 4959.1 → 4959.1.1
16	A	e6gymA4	A:1113-1141,A:1273-1330	RNA_pol_Rpb1_5	4956 → 4956.1 → 4956.1.1
17	A	e6gymA5	A:663-871	RNA_pol_Rpb1_5,RNA_pol_Rpb1_4	4958 → 4958.1 → 4958.1.1
18	A	e6gymA6	A:375-435	RNA_pol_Rpb1_2	275 → 275.1 → 275.1.1
19	A	e6gymA7	A:3-336	RNA_pol_Rpb1_1	4246 → 4246.1 → 4246.1.1
20	A	e6gymA8	A:872-1059	RNA_pol_Rpb1_6	4957 → 4957.1 → 4957.1.1
21	A	e6gymA9	A:337-374,A:436-519	RNA_pol_Rpb1_2	1 → 1.1 → 1.1.2
22	B	e6gymB1	B:1098-1223	RNA_pol_Rpb2_6,RNA_pol_Rpb2_7	4043 → 4043.1 → 4043.1.1
23	B	e6gymB2	B:219-404	RNA_pol_Rpb2_2	4041 → 4041.1 → 4041.1.1
24	B	e6gymB3	B:542-630	RNA_pol_Rpb2_4	4961 → 4961.1 → 4961.1.1
25	B	e6gymB4	B:631-813	RNA_pol_Rpb2_5	4042 → 4042.1 → 4042.1.1
26	B	e6gymB5	B:814-850,B:975-1097	RNA_pol_Rpb2_6	1 → 1.1 → 1.1.2
27	B	e6gymB6	B:851-974	RNA_pol_Rpb2_6	325 → 325.1 → 325.1.7
28	B	e6gymB7	B:20-218,B:405-541	RNA_pol_Rpb2_1,RNA_pol_Rpb2_3	4010 → 4010.1 → 4010.1.1
29	C	e6gymC1	C:4-41,C:173-265	RNA_pol_L	305 → 305.1 → 305.1.1
30	C	e6gymC2	C:42-172	RNA_pol_A_bac	240 → 240.2 → 240.2.1
31	D	e6gymD1	D:24-71,D:131-221	RNA_pol_Rpb4	102 → 102.1 → 102.1.1
32	E	e6gymE1	E:144-215	RNA_pol_Rpb5_C	840 → 840.1 → 840.1.1
33	E	e6gymE2	E:3-143	RNA_pol_Rpb5_N	2008 → 2008.3 → 2008.3.1
34	F	e6gymF1	F:72-154	RNA_pol_Rpb6	152 → 152.1 → 152.1.1
35	G	e6gymG1	G:1-68	SHS2_Rpb7-N	872 → 872.1 → 872.1.1
36	G	e6gymG2	G:69-171	S1	2 → 2.1 → 2.1.1
37	H	e6gymH1	H:2-146	RNA_pol_Rpb8	2 → 2.1 → 2.1.1
38	I	e6gymI1	I:50-117	TFIIS_C	375 → 375.1 → 375.1.1
39	I	e6gymI2	I:2-49	RNA_POL_M_15KD	375 → 375.1 → 375.1.1
40	J	e6gymJ1	J:1-65	RNA_pol_N	101 → 101.4 → 101.4.1
41	K	e6gymK1	K:1-112	RNA_pol_L_2	305 → 305.1 → 305.1.1
42	L	e6gymL1	L:26-70	DNA_RNApol_7kD	375 → 375.1 → 375.1.1
43	M	e6gymM1	M:233-326	TFIIB	101 → 101.1 → 101.1.10
44	M	e6gymM2	M:67-218	TFIIB	101 → 101.1 → 101.1.10
45	M	e6gymM3	M:16-68	TF_Zn_Ribbon	375 → 375.1 → 375.1.1
46	O	e6gymO1	O:61-156	TBP	331 → 331.1 → 331.1.1
47	O	e6gymO2	O:157-240	TBP	331 → 331.1 → 331.1.1
48	Q	e6gymQ1	Q:21-35,Q:97-142,Q:327-415	TFIIF_alpha	59 → 59.1 → 59.1.1
49	R	e6gymR1	R:291-351	TFIIF_beta	101 → 101.1 → 101.1.2
50	R	e6gymR2	R:58-138,R:207-227	TFIIF_beta_N	59 → 59.1 → 59.1.1
51	U	e6gymU1	U:2-47	TFIIA	104 → 104.1 → 104.1.1
52	U	e6gymU2	U:241-286	TFIIA	74 → 74.1 → 74.1.1
53	V	e6gymV1	V:55-119	TFIIA_gamma_C	74 → 74.1 → 74.1.1
54	V	e6gymV2	V:5-54	TFIIA_gamma_N	104 → 104.1 → 104.1.1
55	W	e6gymW01	W:1-102,W:173-271	TFIIE_alpha	101 → 101.1 → 101.1.2
56	W	e6gymW02	W:103-172	TF_Zn_Ribbon	375 → 375.1 → 375.1.1
57	X	e6gymX1	X:250-283	TFA2_E-tether	101 → 101.1 → 101.1.2
58	X	e6gymX2	X:189-249	TFA2_Winged_2	101 → 101.1 → 101.1.2
59	X	e6gymX3	X:123-188	TFIIE_beta	101 → 101.1 → 101.1.2

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors