ECODEvolutionary Classification of Protein Domains

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PDB 6J3Z

ELECTRON MICROSCOPY59 chains52 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 11Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1view chain

1 domain

e6j3z111(11:31-206)

Chain 12Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1view chain

1 domain

e6j3z121(12:31-206)

Chain 13Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1view chain

1 domain

e6j3z131(13:31-206)

Chain 14Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1view chain

1 domain

e6j3z141(14:31-206)

Chain 15Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1view chain

1 domain

e6j3z151(15:31-206)

Chain 16Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1view chain

1 domain

e6j3z161(16:31-206)

Chain 17Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1view chain

1 domain

e6j3z171(17:31-206)

Chain 18Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1view chain

1 domain

e6j3z181(18:31-206)

Chain aPhotosystem II reaction center protein D1view chain

1 domain

e6j3za1(a:11-344)

Chain APhotosystem II reaction center protein D1view chain

1 domain

e6j3zA1(A:11-344)

Chain bPhotosystem II chlorophyll protein CP47view chain

2 domains

e6j3zb1(b:2-328,b:445-485)e6j3zb2(b:329-444)

Chain BPhotosystem II chlorophyll protein CP47view chain

2 domains

e6j3zB1(B:2-328,B:445-485)e6j3zB2(B:329-444)

Chain cPhotosystem II chlorophyll protein CP43view chain

1 domain

e6j3zc1(c:21-471)

Chain CPhotosystem II chlorophyll protein CP43view chain

1 domain

e6j3zC1(C:21-471)

Chain dPhotosystem II reaction center protein D2view chain

1 domain

e6j3zd1(d:11-351)

Chain DPhotosystem II reaction center protein D2view chain

1 domain

e6j3zD1(D:11-351)

Chain eCytochrome b559 subunit alphaview chain

1 domain

e6j3ze1(e:9-83)

Chain ECytochrome b559 subunit alphaview chain

1 domain

e6j3zE1(E:9-83)

Chain fCytochrome b559 subunit betaview chain

1 domain

e6j3zf1(f:16-43)

Chain FCytochrome b559 subunit betaview chain

1 domain

e6j3zF1(F:16-43)

Chain hPhotosystem II reaction center protein Hview chain

1 domain

e6j3zh1(h:2-67)

Chain HPhotosystem II reaction center protein Hview chain

1 domain

e6j3zH1(H:2-67)

Chain iPhotosystem II reaction center protein Iview chain

1 domain

e6j3zi1(i:1-35)

Chain IPhotosystem II reaction center protein Iview chain

1 domain

e6j3zI1(I:1-35)

Chain jPhotosystem II reaction center protein Jview chain

1 domain

e6j3zj1(j:6-39)

Chain JPhotosystem II reaction center protein Jview chain

1 domain

e6j3zJ1(J:6-39)

Chain kPhotosystem II reaction center protein Kview chain

1 domain

e6j3zk1(k:8-44)

Chain KPhotosystem II reaction center protein Kview chain

1 domain

e6j3zK1(K:8-44)

Chain lPhotosystem II reaction center protein Lview chain

1 domain

e6j3zl1(l:1-38)

Chain LPhotosystem II reaction center protein Lview chain

1 domain

e6j3zL1(L:1-38)

Chain mPhotosystem II reaction center protein Mview chain

1 domain

e6j3zm1(m:2-43)

Chain MPhotosystem II reaction center protein Mview chain

1 domain

e6j3zM1(M:2-43)

Chain oExtrinsic protein in photosystem IIview chain

1 domain

e6j3zo1(o:3-247)

Chain OExtrinsic protein in photosystem IIview chain

1 domain

e6j3zO1(O:3-247)

Chain qExtrinsic protein in photosystem IIview chain

1 domain

e6j3zq1(q:70-206)

Chain QExtrinsic protein in photosystem IIview chain

1 domain

e6j3zQ1(Q:70-206)

Chain tPhotosystem II reaction center protein Tview chain

1 domain

e6j3zt1(t:1-30)

Chain TPhotosystem II reaction center protein Tview chain

1 domain

e6j3zT1(T:1-30)

Chain uExtrinsic protein in photosystem IIview chain

1 domain

e6j3zu1(u:10-102)

Chain UExtrinsic protein in photosystem IIview chain

1 domain

e6j3zU1(U:10-102)

Chain vCytochrome c-550view chain

1 domain

e6j3zv1(v:2-137)

Chain VCytochrome c-550view chain

1 domain

e6j3zV1(V:2-137)

Chain wPhotosystem II reaction center protein Wview chain

1 domain

e6j3zw1(w:20-71)

Chain WPhotosystem II reaction center protein Wview chain

1 domain

e6j3zW1(W:20-71)

Chain xPhotosystem II reaction center X proteinview chain

1 domain

e6j3zx1(x:1-37)

Chain XPhotosystem II reaction center X proteinview chain

1 domain

e6j3zX1(X:1-37)

Chain yPhotosystem II reaction center protein Ycf12view chain

1 domain

e6j3zy1(y:1-34)

Chain YPhotosystem II reaction center protein Ycf12view chain

1 domain

e6j3zY1(Y:1-34)

Chain zPhotosystem II reaction center protein Zview chain

1 domain

e6j3zz1(z:1-59)

Chain ZPhotosystem II reaction center protein Zview chain

1 domain

e6j3zZ1(Z:1-59)

All Domains (52)

#	Chain	Domain ID	Range	Family	Classification
1	11	e6j3z111	11:31-206	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
2	12	e6j3z121	12:31-206	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
3	13	e6j3z131	13:31-206	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
4	14	e6j3z141	14:31-206	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
5	15	e6j3z151	15:31-206	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
6	16	e6j3z161	16:31-206	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
7	17	e6j3z171	17:31-206	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
8	18	e6j3z181	18:31-206	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
9	a	e6j3za1	a:11-344	Photo_RC	5037 → 5037.1 → 5037.1.1
10	A	e6j3zA1	A:11-344	Photo_RC	5037 → 5037.1 → 5037.1.1
11	b	e6j3zb1	b:2-328,b:445-485	PSII	5075 → 5075.1 → 5075.1.1
12	b	e6j3zb2	b:329-444	PSII	3744 → 3744.1 → 3744.1.1
13	B	e6j3zB1	B:2-328,B:445-485	PSII	5075 → 5075.1 → 5075.1.1
14	B	e6j3zB2	B:329-444	PSII	3744 → 3744.1 → 3744.1.1
15	c	e6j3zc1	c:21-471	PSII	5075 → 5075.1 → 5075.1.1
16	C	e6j3zC1	C:21-471	PSII	5075 → 5075.1 → 5075.1.1
17	d	e6j3zd1	d:11-351	Photo_RC	5037 → 5037.1 → 5037.1.1
18	D	e6j3zD1	D:11-351	Photo_RC	5037 → 5037.1 → 5037.1.1
19	e	e6j3ze1	e:9-83	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
20	E	e6j3zE1	E:9-83	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
21	f	e6j3zf1	f:16-43	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
22	F	e6j3zF1	F:16-43	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
23	h	e6j3zh1	h:2-67	PsbH	5032 → 5032.1 → 5032.1.1
24	H	e6j3zH1	H:2-67	PsbH	5032 → 5032.1 → 5032.1.1
25	i	e6j3zi1	i:1-35	PsbI	5035 → 5035.1 → 5035.1.1
26	I	e6j3zI1	I:1-35	PsbI	5035 → 5035.1 → 5035.1.1
27	j	e6j3zj1	j:6-39	PsbJ	5031 → 5031.1 → 5031.1.1
28	J	e6j3zJ1	J:6-39	PsbJ	5031 → 5031.1 → 5031.1.1
29	k	e6j3zk1	k:8-44	PsbK	5034 → 5034.1 → 5034.1.1
30	K	e6j3zK1	K:8-44	PsbK	5034 → 5034.1 → 5034.1.1
31	l	e6j3zl1	l:1-38	PsbL	5030 → 5030.1 → 5030.1.1
32	L	e6j3zL1	L:1-38	PsbL	5030 → 5030.1 → 5030.1.1
33	m	e6j3zm1	m:2-43	5033.1.1.0	5033 → 5033.1 → 5033.1.1
34	M	e6j3zM1	M:2-43	5033.1.1.0	5033 → 5033.1 → 5033.1.1
35	o	e6j3zo1	o:3-247	MSP	5084 → 5084.1 → 5084.1.1
36	O	e6j3zO1	O:3-247	MSP	5084 → 5084.1 → 5084.1.1
37	q	e6j3zq1	q:70-206	601.18.1.0	601 → 601.18 → 601.18.1
38	Q	e6j3zQ1	Q:70-206	601.18.1.0	601 → 601.18 → 601.18.1
39	t	e6j3zt1	t:1-30	PsbT	3390 → 3390.1 → 3390.1.1
40	T	e6j3zT1	T:1-30	PsbT	3390 → 3390.1 → 3390.1.1
41	u	e6j3zu1	u:10-102	PsbU	102 → 102.1 → 102.1.1
42	U	e6j3zU1	U:10-102	PsbU	102 → 102.1 → 102.1.1
43	v	e6j3zv1	v:2-137	Cytochrom_C550	107 → 107.1 → 107.1.1
44	V	e6j3zV1	V:2-137	Cytochrom_C550	107 → 107.1 → 107.1.1
45	w	e6j3zw1	w:20-71	1084.1.1.0	1084 → 1084.1 → 1084.1.1
46	W	e6j3zW1	W:20-71	1084.1.1.0	1084 → 1084.1 → 1084.1.1
47	x	e6j3zx1	x:1-37	PsbX	3493 → 3493.1 → 3493.1.1
48	X	e6j3zX1	X:1-37	PsbX	3493 → 3493.1 → 3493.1.1
49	y	e6j3zy1	y:1-34	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
50	Y	e6j3zY1	Y:1-34	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
51	z	e6j3zz1	z:1-59	Ycf9	5044 → 5044.1 → 5044.1.1
52	Z	e6j3zZ1	Z:1-59	Ycf9	5044 → 5044.1 → 5044.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors