ECODEvolutionary Classification of Protein Domains

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PDB 6JLJ

X-RAY DIFFRACTION2.15 Å39 chains41 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain aPhotosystem II protein D1view chain

1 domain

e6jlja1(a:11-344)

Chain APhotosystem II protein D1view chain

1 domain

e6jljA1(A:11-344)

Chain bPhotosystem II CP47 reaction center proteinview chain

2 domains

e6jljb1(b:2-328,b:445-504)e6jljb2(b:329-444)

Chain BPhotosystem II CP47 reaction center proteinview chain

2 domains

e6jljB1(B:329-444)e6jljB2(B:2-328,B:445-505)

Chain cPhotosystem II CP43 reaction center proteinview chain

1 domain

e6jljc1(c:19-473)

Chain CPhotosystem II CP43 reaction center proteinview chain

1 domain

e6jljC1(C:23-473)

Chain dPhotosystem II D2 proteinview chain

1 domain

e6jljd1(d:12-352)

Chain DPhotosystem II D2 proteinview chain

1 domain

e6jljD1(D:12-352)

Chain eCytochrome b559 subunit alphaview chain

1 domain

e6jlje1(e:4-84)

Chain ECytochrome b559 subunit alphaview chain

1 domain

e6jljE1(E:4-84)

Chain fCytochrome b559 subunit betaview chain

1 domain

e6jljf1(f:14-45)

Chain FCytochrome b559 subunit betaview chain

1 domain

e6jljF1(F:12-45)

Chain hPhotosystem II reaction center protein Hview chain

1 domain

e6jljh1(h:2-66)

Chain HPhotosystem II reaction center protein Hview chain

1 domain

e6jljH1(H:2-66)

Chain iPhotosystem II reaction center protein Iview chain

1 domain

e6jlji1(i:1-38)

Chain IPhotosystem II reaction center protein Iview chain

1 domain

e6jljI1(I:1-38)

Chain jPhotosystem II reaction center protein Jview chain

1 domain

e6jljj1(j:1-39)

Chain JPhotosystem II reaction center protein Jview chain

1 domain

e6jljJ1(J:2-39)

Chain kPhotosystem II reaction center protein Kview chain

1 domain

e6jljk1(k:10-46)

Chain KPhotosystem II reaction center protein Kview chain

1 domain

e6jljK1(K:10-46)

Chain lPhotosystem II reaction center protein Lview chain

1 domain

e6jljl1(l:1-37)

Chain LPhotosystem II reaction center protein Lview chain

1 domain

e6jljL1(L:1-37)

Chain mPhotosystem II reaction center protein Mview chain

1 domain

e6jljm1(m:1-34)

Chain MPhotosystem II reaction center protein Mview chain

1 domain

e6jljM1(M:1-34)

Chain oPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e6jljo1(o:4-246)

Chain OPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e6jljO1(O:4-246)

Chain RPhotosystem II protein Yview chain

1 domain

e6jljR1(R:2-31)

Chain tPhotosystem II reaction center protein Tview chain

1 domain

e6jljt1(t:1-30)

Chain TPhotosystem II reaction center protein Tview chain

1 domain

e6jljT1(T:1-30)

Chain uPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e6jlju1(u:8-104)

Chain UPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e6jljU1(U:8-104)

Chain vCytochrome c-550view chain

1 domain

e6jljv1(v:1-137)

Chain VCytochrome c-550view chain

1 domain

e6jljV1(V:1-137)

Chain xPhotosystem II reaction center protein Xview chain

1 domain

e6jljx1(x:2-39)

Chain XPhotosystem II reaction center protein Xview chain

1 domain

e6jljX1(X:2-40)

Chain yPhotosystem II reaction center protein Ycf12view chain

1 domain

e6jljy1(y:18-46)

Chain YPhotosystem II reaction center protein Ycf12view chain

1 domain

e6jljY1(Y:18-46)

Chain zPhotosystem II reaction center protein Zview chain

1 domain

e6jljz1(z:1-62)

Chain ZPhotosystem II reaction center protein Zview chain

1 domain

e6jljZ1(Z:1-62)

All Domains (41)

#	Chain	Domain ID	Range	Family	Classification
1	a	e6jlja1	a:11-344	Photo_RC	5037 → 5037.1 → 5037.1.1
2	A	e6jljA1	A:11-344	Photo_RC	5037 → 5037.1 → 5037.1.1
3	b	e6jljb1	b:2-328,b:445-504	PSII	5075 → 5075.1 → 5075.1.1
4	b	e6jljb2	b:329-444	PSII	3744 → 3744.1 → 3744.1.1
5	B	e6jljB1	B:329-444	PSII	3744 → 3744.1 → 3744.1.1
6	B	e6jljB2	B:2-328,B:445-505	PSII	5075 → 5075.1 → 5075.1.1
7	c	e6jljc1	c:19-473	PSII	5075 → 5075.1 → 5075.1.1
8	C	e6jljC1	C:23-473	PSII	5075 → 5075.1 → 5075.1.1
9	d	e6jljd1	d:12-352	Photo_RC	5037 → 5037.1 → 5037.1.1
10	D	e6jljD1	D:12-352	Photo_RC	5037 → 5037.1 → 5037.1.1
11	e	e6jlje1	e:4-84	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
12	E	e6jljE1	E:4-84	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
13	f	e6jljf1	f:14-45	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
14	F	e6jljF1	F:12-45	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
15	h	e6jljh1	h:2-66	PsbH	5032 → 5032.1 → 5032.1.1
16	H	e6jljH1	H:2-66	PsbH	5032 → 5032.1 → 5032.1.1
17	i	e6jlji1	i:1-38	PsbI	5035 → 5035.1 → 5035.1.1
18	I	e6jljI1	I:1-38	PsbI	5035 → 5035.1 → 5035.1.1
19	j	e6jljj1	j:1-39	PsbJ	5031 → 5031.1 → 5031.1.1
20	J	e6jljJ1	J:2-39	PsbJ	5031 → 5031.1 → 5031.1.1
21	k	e6jljk1	k:10-46	PsbK	5034 → 5034.1 → 5034.1.1
22	K	e6jljK1	K:10-46	PsbK	5034 → 5034.1 → 5034.1.1
23	l	e6jljl1	l:1-37	PsbL	5030 → 5030.1 → 5030.1.1
24	L	e6jljL1	L:1-37	PsbL	5030 → 5030.1 → 5030.1.1
25	m	e6jljm1	m:1-34	PsbM	5033 → 5033.1 → 5033.1.1
26	M	e6jljM1	M:1-34	PsbM	5033 → 5033.1 → 5033.1.1
27	o	e6jljo1	o:4-246	MSP	5084 → 5084.1 → 5084.1.1
28	O	e6jljO1	O:4-246	MSP	5084 → 5084.1 → 5084.1.1
29	R	e6jljR1	R:2-31	PsbY	6106 → 6106.1 → 6106.1.1
30	t	e6jljt1	t:1-30	PsbT	3390 → 3390.1 → 3390.1.1
31	T	e6jljT1	T:1-30	PsbT	3390 → 3390.1 → 3390.1.1
32	u	e6jlju1	u:8-104	PsbU	102 → 102.1 → 102.1.1
33	U	e6jljU1	U:8-104	PsbU	102 → 102.1 → 102.1.1
34	v	e6jljv1	v:1-137	Cytochrom_C550	107 → 107.1 → 107.1.1
35	V	e6jljV1	V:1-137	Cytochrom_C550	107 → 107.1 → 107.1.1
36	x	e6jljx1	x:2-39	PsbX	3493 → 3493.1 → 3493.1.1
37	X	e6jljX1	X:2-40	PsbX	3493 → 3493.1 → 3493.1.1
38	y	e6jljy1	y:18-46	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
39	Y	e6jljY1	Y:18-46	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
40	z	e6jljz1	z:1-62	Ycf9	5044 → 5044.1 → 5044.1.1
41	Z	e6jljZ1	Z:1-62	Ycf9	5044 → 5044.1 → 5044.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors