ECODEvolutionary Classification of Protein Domains

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PDB 6JLP

X-RAY DIFFRACTION2.50 Å39 chains41 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain aPhotosystem II protein D1view chain

1 domain

e6jlpa1(a:11-344)

Chain APhotosystem II protein D1view chain

1 domain

e6jlpA1(A:11-344)

Chain bPhotosystem II CP47 reaction center proteinview chain

2 domains

e6jlpb1(b:2-328,b:445-504)e6jlpb2(b:329-444)

Chain BPhotosystem II CP47 reaction center proteinview chain

2 domains

e6jlpB1(B:329-444)e6jlpB2(B:2-328,B:445-505)

Chain cPhotosystem II CP43 reaction center proteinview chain

1 domain

e6jlpc1(c:19-473)

Chain CPhotosystem II CP43 reaction center proteinview chain

1 domain

e6jlpC1(C:23-473)

Chain dPhotosystem II D2 proteinview chain

1 domain

e6jlpd1(d:12-352)

Chain DPhotosystem II D2 proteinview chain

1 domain

e6jlpD1(D:12-352)

Chain eCytochrome b559 subunit alphaview chain

1 domain

e6jlpe1(e:4-84)

Chain ECytochrome b559 subunit alphaview chain

1 domain

e6jlpE1(E:4-84)

Chain fCytochrome b559 subunit betaview chain

1 domain

e6jlpf1(f:14-45)

Chain FCytochrome b559 subunit betaview chain

1 domain

e6jlpF1(F:12-45)

Chain hPhotosystem II reaction center protein Hview chain

1 domain

e6jlph1(h:2-66)

Chain HPhotosystem II reaction center protein Hview chain

1 domain

e6jlpH1(H:2-66)

Chain iPhotosystem II reaction center protein Iview chain

1 domain

e6jlpi1(i:1-38)

Chain IPhotosystem II reaction center protein Iview chain

1 domain

e6jlpI1(I:1-38)

Chain jPhotosystem II reaction center protein Jview chain

1 domain

e6jlpj1(j:1-39)

Chain JPhotosystem II reaction center protein Jview chain

1 domain

e6jlpJ1(J:2-39)

Chain kPhotosystem II reaction center protein Kview chain

1 domain

e6jlpk1(k:10-46)

Chain KPhotosystem II reaction center protein Kview chain

1 domain

e6jlpK1(K:10-46)

Chain lPhotosystem II reaction center protein Lview chain

1 domain

e6jlpl1(l:1-37)

Chain LPhotosystem II reaction center protein Lview chain

1 domain

e6jlpL1(L:1-37)

Chain mPhotosystem II reaction center protein Mview chain

1 domain

e6jlpm1(m:1-34)

Chain MPhotosystem II reaction center protein Mview chain

1 domain

e6jlpM1(M:1-34)

Chain oPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e6jlpo1(o:4-246)

Chain OPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e6jlpO1(O:4-246)

Chain RPhotosystem II protein Yview chain

1 domain

e6jlpR1(R:2-31)

Chain tPhotosystem II reaction center protein Tview chain

1 domain

e6jlpt1(t:1-30)

Chain TPhotosystem II reaction center protein Tview chain

1 domain

e6jlpT1(T:1-30)

Chain uPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e6jlpu1(u:8-104)

Chain UPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e6jlpU1(U:8-104)

Chain vCytochrome c-550view chain

1 domain

e6jlpv1(v:1-137)

Chain VCytochrome c-550view chain

1 domain

e6jlpV1(V:1-137)

Chain xPhotosystem II reaction center protein Xview chain

1 domain

e6jlpx1(x:2-39)

Chain XPhotosystem II reaction center protein Xview chain

1 domain

e6jlpX1(X:2-40)

Chain yPhotosystem II reaction center protein Ycf12view chain

1 domain

e6jlpy1(y:18-46)

Chain YPhotosystem II reaction center protein Ycf12view chain

1 domain

e6jlpY1(Y:18-46)

Chain zPhotosystem II reaction center protein Zview chain

1 domain

e6jlpz1(z:1-62)

Chain ZPhotosystem II reaction center protein Zview chain

1 domain

e6jlpZ1(Z:1-62)

All Domains (41)

#	Chain	Domain ID	Range	Family	Classification
1	a	e6jlpa1	a:11-344	Photo_RC	5037 → 5037.1 → 5037.1.1
2	A	e6jlpA1	A:11-344	Photo_RC	5037 → 5037.1 → 5037.1.1
3	b	e6jlpb1	b:2-328,b:445-504	PSII	5075 → 5075.1 → 5075.1.1
4	b	e6jlpb2	b:329-444	PSII	3744 → 3744.1 → 3744.1.1
5	B	e6jlpB1	B:329-444	PSII	3744 → 3744.1 → 3744.1.1
6	B	e6jlpB2	B:2-328,B:445-505	PSII	5075 → 5075.1 → 5075.1.1
7	c	e6jlpc1	c:19-473	PSII	5075 → 5075.1 → 5075.1.1
8	C	e6jlpC1	C:23-473	PSII	5075 → 5075.1 → 5075.1.1
9	d	e6jlpd1	d:12-352	Photo_RC	5037 → 5037.1 → 5037.1.1
10	D	e6jlpD1	D:12-352	Photo_RC	5037 → 5037.1 → 5037.1.1
11	e	e6jlpe1	e:4-84	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
12	E	e6jlpE1	E:4-84	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
13	f	e6jlpf1	f:14-45	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
14	F	e6jlpF1	F:12-45	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
15	h	e6jlph1	h:2-66	PsbH	5032 → 5032.1 → 5032.1.1
16	H	e6jlpH1	H:2-66	PsbH	5032 → 5032.1 → 5032.1.1
17	i	e6jlpi1	i:1-38	PsbI	5035 → 5035.1 → 5035.1.1
18	I	e6jlpI1	I:1-38	PsbI	5035 → 5035.1 → 5035.1.1
19	j	e6jlpj1	j:1-39	PsbJ	5031 → 5031.1 → 5031.1.1
20	J	e6jlpJ1	J:2-39	PsbJ	5031 → 5031.1 → 5031.1.1
21	k	e6jlpk1	k:10-46	PsbK	5034 → 5034.1 → 5034.1.1
22	K	e6jlpK1	K:10-46	PsbK	5034 → 5034.1 → 5034.1.1
23	l	e6jlpl1	l:1-37	PsbL	5030 → 5030.1 → 5030.1.1
24	L	e6jlpL1	L:1-37	PsbL	5030 → 5030.1 → 5030.1.1
25	m	e6jlpm1	m:1-34	PsbM	5033 → 5033.1 → 5033.1.1
26	M	e6jlpM1	M:1-34	PsbM	5033 → 5033.1 → 5033.1.1
27	o	e6jlpo1	o:4-246	MSP	5084 → 5084.1 → 5084.1.1
28	O	e6jlpO1	O:4-246	MSP	5084 → 5084.1 → 5084.1.1
29	R	e6jlpR1	R:2-31	PsbY	6106 → 6106.1 → 6106.1.1
30	t	e6jlpt1	t:1-30	PsbT	3390 → 3390.1 → 3390.1.1
31	T	e6jlpT1	T:1-30	PsbT	3390 → 3390.1 → 3390.1.1
32	u	e6jlpu1	u:8-104	PsbU	102 → 102.1 → 102.1.1
33	U	e6jlpU1	U:8-104	PsbU	102 → 102.1 → 102.1.1
34	v	e6jlpv1	v:1-137	Cytochrom_C550	107 → 107.1 → 107.1.1
35	V	e6jlpV1	V:1-137	Cytochrom_C550	107 → 107.1 → 107.1.1
36	x	e6jlpx1	x:2-39	PsbX	3493 → 3493.1 → 3493.1.1
37	X	e6jlpX1	X:2-40	PsbX	3493 → 3493.1 → 3493.1.1
38	y	e6jlpy1	y:18-46	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
39	Y	e6jlpY1	Y:18-46	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
40	z	e6jlpz1	z:1-62	Ycf9	5044 → 5044.1 → 5044.1.1
41	Z	e6jlpZ1	Z:1-62	Ycf9	5044 → 5044.1 → 5044.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors