ECODEvolutionary Classification of Protein Domains

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PDB 6MNN

X-RAY DIFFRACTION2.83 Å4 chains8 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain A6236 TCR alpha chainview chain

2 domains

e6mnnA1(A:116-203)e6mnnA2(A:2-115)

Chain B6236 TCR beta chainview chain

2 domains

e6mnnB1(B:115-239)e6mnnB2(B:1-114)

Chain CH-2 class II histocompatibility antigen, A-B alpha chainview chain

2 domains

e6mnnC1(C:0-81)e6mnnC2(C:82-178)

Chain DPadi4 (92-105) peptide and MHC Class II I-Ab beta chainview chain

2 domains

e6mnnD1(D:78-191)e6mnnD2(D:4-84)

All Domains (8)

#	Chain	Domain ID	Range	Family	Classification
1	A	e6mnnA1	A:116-203	DUF1968	11 → 11.1 → 11.1.1
2	A	e6mnnA2	A:2-115	V-set	11 → 11.1 → 11.1.1
3	B	e6mnnB1	B:115-239	C1-set	11 → 11.1 → 11.1.1
4	B	e6mnnB2	B:1-114	V-set	11 → 11.1 → 11.1.1
5	C	e6mnnC1	C:0-81	MHC_II_alpha	233 → 233.1 → 233.1.1
6	C	e6mnnC2	C:82-178	C1-set	11 → 11.1 → 11.1.1
7	D	e6mnnD1	D:78-191	C1-set	11 → 11.1 → 11.1.1
8	D	e6mnnD2	D:4-84	MHC_II_beta	233 → 233.1 → 233.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors