ECODEvolutionary Classification of Protein Domains

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PDB 6MUF

X-RAY DIFFRACTION2.90 Å6 chains10 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain BEnvelope glycoprotein gp160view chain

1 domain

e6mufB1(B:519-545,B:569-663)

Chain D35O22 scFv heavy chain portionview chain

1 domain

e6mufD1(D:1-110)

Chain E35O22 scFv light chain portionview chain

1 domain

e6mufE1(E:0-107)

Chain GEnvelope glycoprotein gp160view chain

3 domains

e6mufG1(G:120-135,G:153-202)e6mufG2(G:32-119,G:203-255,G:474-504)e6mufG3(G:256-473)

Chain H3H109L Fab heavy chainview chain

2 domains

e6mufH1(H:1-110)e6mufH2(H:111-211)

Chain L3H109L Fab light chainview chain

2 domains

e6mufL1(L:6-108)e6mufL2(L:109-210)

All Domains (10)

#	Chain	Domain ID	Range	Family	Classification
1	B	e6mufB1	B:519-545,B:569-663	GP41	3567 → 3567.1 → 3567.1.1
2	D	e6mufD1	D:1-110	V-set	11 → 11.1 → 11.1.1
3	E	e6mufE1	E:0-107	V-set	11 → 11.1 → 11.1.1
4	G	e6mufG1	G:120-135,G:153-202	GP120	6173 → 6173.1 → 6173.1.1
5	G	e6mufG2	G:32-119,G:203-255,G:474-504	GP120	1061 → 1061.1 → 1061.1.1
6	G	e6mufG3	G:256-473	GP120	259 → 259.1 → 259.1.1
7	H	e6mufH1	H:1-110	V-set	11 → 11.1 → 11.1.1
8	H	e6mufH2	H:111-211	C1-set	11 → 11.1 → 11.1.1
9	L	e6mufL1	L:6-108	V-set	11 → 11.1 → 11.1.1
10	L	e6mufL2	L:109-210	C1-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors