ECODEvolutionary Classification of Protein Domains

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PDB 6ND1

ELECTRON MICROSCOPY6 chains7 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AProtein translocation protein SEC63view chain

3 domains

e6nd1A1(A:427-456,A:477-614)e6nd1A2(A:254-366)e6nd1A3(A:367-426)

Chain BProtein transport protein SEC61view chain

1 domain

e6nd1B1(B:19-93,B:115-310,B:360-465)

Chain CProtein transport protein SSS1view chain

1 domain

e6nd1C1(C:25-80)

Chain DProtein transport protein SBH1view chain

1 domain

e6nd1D1(D:36-77)

Chain FTranslocation protein SEC72view chain

1 domain

e6nd1F1(F:101-192)

All Domains (7)

#	Chain	Domain ID	Range	Family	Classification
1	A	e6nd1A1	A:427-456,A:477-614	11.1.1.0	11 → 11.1 → 11.1.1
2	A	e6nd1A2	A:254-366	4156.1.1.0	4156 → 4156.1 → 4156.1.1
3	A	e6nd1A3	A:367-426	102.5.1.0	102 → 102.5 → 102.5.1
4	B	e6nd1B1	B:19-93,B:115-310,B:360-465	SecY,Plug_translocon	5061 → 5061.1 → 5061.1.1
5	C	e6nd1C1	C:25-80	SecE	5027 → 5027.1 → 5027.1.1
6	D	e6nd1D1	D:36-77	Sec61_beta	5028 → 5028.1 → 5028.1.1
7	F	e6nd1F1	F:101-192	109.4.1.0	109 → 109.4 → 109.4.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors