ECODEvolutionary Classification of Protein Domains

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PDB 6NF5

ELECTRON MICROSCOPY18 chains24 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AHIV-1 Env BG505 MD64 N332-GT5 SOSIP gp120view chain

3 domains

e6nf5A1(A:256-473)e6nf5A2(A:33-119,A:203-255,A:474-505)e6nf5A3(A:120-202)

Chain BHIV-1 Env BG505 MD64 N332-GT5 SOSIP gp41view chain

1 domain

e6nf5B1(B:520-546,B:572-664)

Chain CHIV-1 Env BG505 MD64 N332-GT5 SOSIP gp120view chain

3 domains

e6nf5C1(C:120-202)e6nf5C2(C:33-119,C:203-255,C:474-505)e6nf5C3(C:256-473)

Chain DHIV-1 Env BG505 MD64 N332-GT5 SOSIP gp41view chain

1 domain

e6nf5D1(D:520-546,D:572-664)

Chain EBG18-like precursor HMP1 fragment antigen binding heavy chainview chain

1 domain

e6nf5E1(E:2-111)

Chain FBG18-like precursor HMP1 fragment antigen binding light chainview chain

1 domain

e6nf5F1(F:3-106)

Chain Gbase-binding RM20A3 fragment antigen binding heavy chainview chain

1 domain

e6nf5G1(G:1-111)

Chain HBG18-like precursor HMP1 fragment antigen binding heavy chainview chain

1 domain

e6nf5H1(H:2-111)

Chain Ibase-binding RM20A3 fragment antigen binding light chainview chain

1 domain

e6nf5I1(I:3-106)

Chain JHIV-1 Env BG505 MD64 N332-GT5 SOSIP gp120view chain

3 domains

e6nf5J1(J:120-202)e6nf5J2(J:33-119,J:203-255,J:474-505)e6nf5J3(J:256-473)

Chain Kbase-binding RM20A3 fragment antigen binding heavy chainview chain

1 domain

e6nf5K1(K:1-111)

Chain LBG18-like precursor HMP1 fragment antigen binding light chainview chain

1 domain

e6nf5L1(L:3-106)

Chain MHIV-1 Env BG505 MD64 N332-GT5 SOSIP gp41view chain

1 domain

e6nf5M1(M:520-546,M:572-664)

Chain Nbase-binding RM20A3 fragment antigen binding light chainview chain

1 domain

e6nf5N1(N:3-106)

Chain OBG18-like precursor HMP1 fragment antigen binding heavy chainview chain

1 domain

e6nf5O1(O:2-111)

Chain PBG18-like precursor HMP1 fragment antigen binding light chainview chain

1 domain

e6nf5P1(P:3-106)

Chain Qbase-binding RM20A3 fragment antigen binding heavy chainview chain

1 domain

e6nf5Q1(Q:1-111)

Chain Rbase-binding RM20A3 fragment antigen binding light chainview chain

1 domain

e6nf5R1(R:3-106)

All Domains (24)

#	Chain	Domain ID	Range	Family	Classification
1	A	e6nf5A1	A:256-473	GP120	259 → 259.1 → 259.1.1
2	A	e6nf5A2	A:33-119,A:203-255,A:474-505	GP120	1061 → 1061.1 → 1061.1.1
3	A	e6nf5A3	A:120-202	GP120	6173 → 6173.1 → 6173.1.1
4	B	e6nf5B1	B:520-546,B:572-664	GP41	3567 → 3567.1 → 3567.1.1
5	C	e6nf5C1	C:120-202	GP120	6173 → 6173.1 → 6173.1.1
6	C	e6nf5C2	C:33-119,C:203-255,C:474-505	GP120	1061 → 1061.1 → 1061.1.1
7	C	e6nf5C3	C:256-473	GP120	259 → 259.1 → 259.1.1
8	D	e6nf5D1	D:520-546,D:572-664	GP41	3567 → 3567.1 → 3567.1.1
9	E	e6nf5E1	E:2-111	V-set	11 → 11.1 → 11.1.1
10	F	e6nf5F1	F:3-106	V-set	11 → 11.1 → 11.1.1
11	G	e6nf5G1	G:1-111	V-set	11 → 11.1 → 11.1.1
12	H	e6nf5H1	H:2-111	V-set	11 → 11.1 → 11.1.1
13	I	e6nf5I1	I:3-106	V-set	11 → 11.1 → 11.1.1
14	J	e6nf5J1	J:120-202	GP120	6173 → 6173.1 → 6173.1.1
15	J	e6nf5J2	J:33-119,J:203-255,J:474-505	GP120	1061 → 1061.1 → 1061.1.1
16	J	e6nf5J3	J:256-473	GP120	259 → 259.1 → 259.1.1
17	K	e6nf5K1	K:1-111	V-set	11 → 11.1 → 11.1.1
18	L	e6nf5L1	L:3-106	V-set	11 → 11.1 → 11.1.1
19	M	e6nf5M1	M:520-546,M:572-664	GP41	3567 → 3567.1 → 3567.1.1
20	N	e6nf5N1	N:3-106	V-set	11 → 11.1 → 11.1.1
21	O	e6nf5O1	O:2-111	V-set	11 → 11.1 → 11.1.1
22	P	e6nf5P1	P:3-106	V-set	11 → 11.1 → 11.1.1
23	Q	e6nf5Q1	Q:1-111	V-set	11 → 11.1 → 11.1.1
24	R	e6nf5R1	R:3-106	V-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors