ECODEvolutionary Classification of Protein Domains

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PDB 6PMD

X-RAY DIFFRACTION2.21 Å25 chains14 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AATP-dependent Clp protease proteolytic subunitview chain

1 domain

e6pmdA1(A:3-194)

Chain BATP-dependent Clp protease proteolytic subunitview chain

1 domain

e6pmdB1(B:4-192)

Chain CATP-dependent Clp protease proteolytic subunitview chain

1 domain

e6pmdC1(C:4-192)

Chain DATP-dependent Clp protease proteolytic subunitview chain

1 domain

e6pmdD1(D:3-192)

Chain EATP-dependent Clp protease proteolytic subunitview chain

1 domain

e6pmdE1(E:3-193)

Chain FATP-dependent Clp protease proteolytic subunitview chain

1 domain

e6pmdF1(F:3-192)

Chain GATP-dependent Clp protease proteolytic subunitview chain

1 domain

e6pmdG1(G:3-192)

Chain IATP-dependent Clp protease proteolytic subunitview chain

1 domain

e6pmdI1(I:3-193)

Chain KATP-dependent Clp protease proteolytic subunitview chain

1 domain

e6pmdK1(K:3-192)

Chain LATP-dependent Clp protease proteolytic subunitview chain

1 domain

e6pmdL1(L:4-192)

Chain MATP-dependent Clp protease proteolytic subunitview chain

1 domain

e6pmdM1(M:3-193)

Chain NATP-dependent Clp protease proteolytic subunitview chain

1 domain

e6pmdN1(N:3-193)

Chain SATP-dependent Clp protease proteolytic subunitview chain

1 domain

e6pmdS1(S:3-192)

Chain TATP-dependent Clp protease proteolytic subunitview chain

1 domain

e6pmdT1(T:3-193)

All Domains (14)

#	Chain	Domain ID	Range	Family	Classification
1	A	e6pmdA1	A:3-194	CLP_protease	2486 → 2486.1 → 2486.1.1
2	B	e6pmdB1	B:4-192	CLP_protease	2486 → 2486.1 → 2486.1.1
3	C	e6pmdC1	C:4-192	CLP_protease	2486 → 2486.1 → 2486.1.1
4	D	e6pmdD1	D:3-192	CLP_protease	2486 → 2486.1 → 2486.1.1
5	E	e6pmdE1	E:3-193	CLP_protease	2486 → 2486.1 → 2486.1.1
6	F	e6pmdF1	F:3-192	CLP_protease	2486 → 2486.1 → 2486.1.1
7	G	e6pmdG1	G:3-192	CLP_protease	2486 → 2486.1 → 2486.1.1
8	I	e6pmdI1	I:3-193	CLP_protease	2486 → 2486.1 → 2486.1.1
9	K	e6pmdK1	K:3-192	CLP_protease	2486 → 2486.1 → 2486.1.1
10	L	e6pmdL1	L:4-192	CLP_protease	2486 → 2486.1 → 2486.1.1
11	M	e6pmdM1	M:3-193	CLP_protease	2486 → 2486.1 → 2486.1.1
12	N	e6pmdN1	N:3-193	CLP_protease	2486 → 2486.1 → 2486.1.1
13	S	e6pmdS1	S:3-192	CLP_protease	2486 → 2486.1 → 2486.1.1
14	T	e6pmdT1	T:3-193	CLP_protease	2486 → 2486.1 → 2486.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors