ECODEvolutionary Classification of Protein Domains

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PDB 6PVD

X-RAY DIFFRACTION2.14 Å8 chains14 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AMajor histocompatibility complex class I-related gene proteinview chain

2 domains

e6pvdA1(A:0-178)e6pvdA2(A:179-270)

Chain BBeta-2-microglobulinview chain

1 domain

e6pvdB1(B:0-97)

Chain CMajor histocompatibility complex class I-related gene proteinview chain

2 domains

e6pvdC1(C:179-270)e6pvdC2(C:0-178)

Chain DHuman TCR alpha chainview chain

2 domains

e6pvdD1(D:116-198)e6pvdD2(D:2-115)

Chain EHuman TCR beta chainview chain

2 domains

e6pvdE1(E:3-119)e6pvdE2(E:120-243)

Chain FBeta-2-microglobulinview chain

1 domain

e6pvdF1(F:0-99)

Chain GHuman TCR alpha chainview chain

2 domains

e6pvdG1(G:116-201)e6pvdG2(G:2-115)

Chain HHuman TCR beta chainview chain

2 domains

e6pvdH1(H:1-119)e6pvdH2(H:120-244)

All Domains (14)

#	Chain	Domain ID	Range	Family	Classification
1	A	e6pvdA1	A:0-178	MHC_I	233 → 233.1 → 233.1.1
2	A	e6pvdA2	A:179-270	C1-set	11 → 11.1 → 11.1.1
3	B	e6pvdB1	B:0-97	C1-set	11 → 11.1 → 11.1.1
4	C	e6pvdC1	C:179-270	C1-set	11 → 11.1 → 11.1.1
5	C	e6pvdC2	C:0-178	MHC_I	233 → 233.1 → 233.1.1
6	D	e6pvdD1	D:116-198	DUF1968	11 → 11.1 → 11.1.1
7	D	e6pvdD2	D:2-115	V-set	11 → 11.1 → 11.1.1
8	E	e6pvdE1	E:3-119	V-set	11 → 11.1 → 11.1.1
9	E	e6pvdE2	E:120-243	C1-set	11 → 11.1 → 11.1.1
10	F	e6pvdF1	F:0-99	C1-set	11 → 11.1 → 11.1.1
11	G	e6pvdG1	G:116-201	DUF1968	11 → 11.1 → 11.1.1
12	G	e6pvdG2	G:2-115	V-set	11 → 11.1 → 11.1.1
13	H	e6pvdH1	H:1-119	V-set	11 → 11.1 → 11.1.1
14	H	e6pvdH2	H:120-244	C1-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors