ECODEvolutionary Classification of Protein Domains

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PDB 6S53

X-RAY DIFFRACTION2.80 Å12 chains12 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AE3 ubiquitin-protein ligase TRIM21view chain

1 domain

e6s53A1(A:3-81)

Chain BE3 ubiquitin-protein ligase TRIM21view chain

1 domain

e6s53B1(B:3-81)

Chain CUbiquitin-conjugating enzyme E2 Nview chain

1 domain

e6s53C1(C:4-152)

Chain DPolyubiquitin-Cview chain

1 domain

e6s53D1(D:1-76)

Chain EUbiquitin-conjugating enzyme E2 Nview chain

1 domain

e6s53E1(E:5-152)

Chain FPolyubiquitin-Cview chain

1 domain

e6s53F1(F:1-76)

Chain GE3 ubiquitin-protein ligase TRIM21view chain

1 domain

e6s53G1(G:1-81)

Chain HE3 ubiquitin-protein ligase TRIM21view chain

1 domain

e6s53H1(H:6-82)

Chain IUbiquitin-conjugating enzyme E2 Nview chain

1 domain

e6s53I1(I:4-152)

Chain JPolyubiquitin-Cview chain

1 domain

e6s53J1(J:1-76)

Chain KUbiquitin-conjugating enzyme E2 Nview chain

1 domain

e6s53K1(K:4-152)

Chain LPolyubiquitin-Cview chain

1 domain

e6s53L1(L:1-76)

All Domains (12)

#	Chain	Domain ID	Range	Family	Classification
1	A	e6s53A1	A:3-81	zf-C3HC4	376 → 376.1 → 376.1.1
2	B	e6s53B1	B:3-81	zf-C3HC4	376 → 376.1 → 376.1.1
3	C	e6s53C1	C:4-152	UQ_con	216 → 216.1 → 216.1.1
4	D	e6s53D1	D:1-76	ubiquitin	221 → 221.1 → 221.1.1
5	E	e6s53E1	E:5-152	UQ_con	216 → 216.1 → 216.1.1
6	F	e6s53F1	F:1-76	ubiquitin	221 → 221.1 → 221.1.1
7	G	e6s53G1	G:1-81	zf-C3HC4	376 → 376.1 → 376.1.1
8	H	e6s53H1	H:6-82	zf-C3HC4	376 → 376.1 → 376.1.1
9	I	e6s53I1	I:4-152	UQ_con	216 → 216.1 → 216.1.1
10	J	e6s53J1	J:1-76	ubiquitin	221 → 221.1 → 221.1.1
11	K	e6s53K1	K:4-152	UQ_con	216 → 216.1 → 216.1.1
12	L	e6s53L1	L:1-76	ubiquitin	221 → 221.1 → 221.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors