ECODEvolutionary Classification of Protein Domains

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PDB 6SQO

X-RAY DIFFRACTION1.41 Å6 chains6 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AE3 ubiquitin-protein ligase Mdm2view chain

1 domain

e6sqoA1(A:430-491)

Chain BUbiquitin-conjugating enzyme E2 D2view chain

1 domain

e6sqoB1(B:2-147)

Chain CUbiquitin-40S ribosomal protein S27aview chain

1 domain

e6sqoC1(C:0-76)

Chain DE3 ubiquitin-protein ligase Mdm2view chain

1 domain

e6sqoD1(D:430-491)

Chain EUbiquitin-conjugating enzyme E2 D2view chain

1 domain

e6sqoE1(E:2-147)

Chain FUbiquitin-40S ribosomal protein S27aview chain

1 domain

e6sqoF1(F:0-76)

All Domains (6)

#	Chain	Domain ID	Range	Family	Classification
1	A	e6sqoA1	A:430-491	zf-C3HC4_3	376 → 376.1 → 376.1.1
2	B	e6sqoB1	B:2-147	UQ_con	216 → 216.1 → 216.1.1
3	C	e6sqoC1	C:0-76	ubiquitin	221 → 221.1 → 221.1.1
4	D	e6sqoD1	D:430-491	zf-C3HC4_3	376 → 376.1 → 376.1.1
5	E	e6sqoE1	E:2-147	UQ_con	216 → 216.1 → 216.1.1
6	F	e6sqoF1	F:0-76	ubiquitin	221 → 221.1 → 221.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors