ECODEvolutionary Classification of Protein Domains

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PDB 6SSK

ELECTRON MICROSCOPY9 chains18 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AEndogenous retrovirus group K member 24 Gag polyproteinview chain

2 domains

e6sskA1(A:155-235)e6sskA2(A:1-154)

Chain BEndogenous retrovirus group K member 24 Gag polyproteinview chain

2 domains

e6sskB1(B:155-235)e6sskB2(B:1-154)

Chain CEndogenous retrovirus group K member 24 Gag polyproteinview chain

2 domains

e6sskC1(C:1-154)e6sskC2(C:155-235)

Chain DEndogenous retrovirus group K member 24 Gag polyproteinview chain

2 domains

e6sskD1(D:1-154)e6sskD2(D:155-236)

Chain EEndogenous retrovirus group K member 24 Gag polyproteinview chain

2 domains

e6sskE1(E:155-236)e6sskE2(E:1-154)

Chain FEndogenous retrovirus group K member 24 Gag polyproteinview chain

2 domains

e6sskF1(F:1-154)e6sskF2(F:155-236)

Chain GEndogenous retrovirus group K member 24 Gag polyproteinview chain

2 domains

e6sskG1(G:155-236)e6sskG2(G:1-154)

Chain HEndogenous retrovirus group K member 24 Gag polyproteinview chain

2 domains

e6sskH1(H:155-236)e6sskH2(H:1-154)

Chain IEndogenous retrovirus group K member 24 Gag polyproteinview chain

2 domains

e6sskI1(I:155-236)e6sskI2(I:1-154)

All Domains (18)

#	Chain	Domain ID	Range	Family	Classification
1	A	e6sskA1	A:155-235	Gag_p24_C	170 → 170.1 → 170.1.1
2	A	e6sskA2	A:1-154	Gag_p24	170 → 170.2 → 170.2.1
3	B	e6sskB1	B:155-235	Gag_p24_C	170 → 170.1 → 170.1.1
4	B	e6sskB2	B:1-154	Gag_p24	170 → 170.2 → 170.2.1
5	C	e6sskC1	C:1-154	Gag_p24	170 → 170.2 → 170.2.1
6	C	e6sskC2	C:155-235	Gag_p24_C	170 → 170.1 → 170.1.1
7	D	e6sskD1	D:1-154	Gag_p24	170 → 170.2 → 170.2.1
8	D	e6sskD2	D:155-236	Gag_p24_C	170 → 170.1 → 170.1.1
9	E	e6sskE1	E:155-236	Gag_p24_C	170 → 170.1 → 170.1.1
10	E	e6sskE2	E:1-154	Gag_p24	170 → 170.2 → 170.2.1
11	F	e6sskF1	F:1-154	Gag_p24	170 → 170.2 → 170.2.1
12	F	e6sskF2	F:155-236	Gag_p24_C	170 → 170.1 → 170.1.1
13	G	e6sskG1	G:155-236	Gag_p24_C	170 → 170.1 → 170.1.1
14	G	e6sskG2	G:1-154	Gag_p24	170 → 170.2 → 170.2.1
15	H	e6sskH1	H:155-236	Gag_p24_C	170 → 170.1 → 170.1.1
16	H	e6sskH2	H:1-154	Gag_p24	170 → 170.2 → 170.2.1
17	I	e6sskI1	I:155-236	Gag_p24_C	170 → 170.1 → 170.1.1
18	I	e6sskI2	I:1-154	Gag_p24	170 → 170.2 → 170.2.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors