ECODEvolutionary Classification of Protein Domains

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PDB 6VME

X-RAY DIFFRACTION2.19 Å24 chains18 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain BTumor susceptibility gene 101 proteinview chain

1 domain

e6vmeB1(B:313-388)

Chain CVacuolar protein sorting-associated protein 37Bview chain

1 domain

e6vmeC1(C:99-165)

Chain EVacuolar protein sorting-associated protein 28 homologview chain

1 domain

e6vmeE1(E:16-117)

Chain FTumor susceptibility gene 101 proteinview chain

1 domain

e6vmeF1(F:312-388)

Chain GTumor susceptibility gene 101 proteinview chain

1 domain

e6vmeG1(G:314-388)

Chain HTumor susceptibility gene 101 proteinview chain

1 domain

e6vmeH1(H:312-387)

Chain ITumor susceptibility gene 101 proteinview chain

1 domain

e6vmeI1(I:313-387)

Chain JTumor susceptibility gene 101 proteinview chain

1 domain

e6vmeJ1(J:312-387)

Chain KVacuolar protein sorting-associated protein 37Bview chain

1 domain

e6vmeK1(K:102-166)

Chain LVacuolar protein sorting-associated protein 37Bview chain

1 domain

e6vmeL1(L:102-166)

Chain MVacuolar protein sorting-associated protein 37Bview chain

1 domain

e6vmeM1(M:101-165)

Chain NVacuolar protein sorting-associated protein 37Bview chain

1 domain

e6vmeN1(N:99-165)

Chain OVacuolar protein sorting-associated protein 37Bview chain

1 domain

e6vmeO1(O:103-164)

Chain UVacuolar protein sorting-associated protein 28 homologview chain

1 domain

e6vmeU1(U:17-118)

Chain VVacuolar protein sorting-associated protein 28 homologview chain

1 domain

e6vmeV1(V:15-118)

Chain WVacuolar protein sorting-associated protein 28 homologview chain

1 domain

e6vmeW1(W:14-118)

Chain XVacuolar protein sorting-associated protein 28 homologview chain

1 domain

e6vmeX1(X:18-118)

Chain YVacuolar protein sorting-associated protein 28 homologview chain

1 domain

e6vmeY1(Y:19-118)

All Domains (18)

#	Chain	Domain ID	Range	Family	Classification
1	B	e6vmeB1	B:313-388	Vps23_core	192 → 192.15 → 192.15.1
2	C	e6vmeC1	C:99-165	Mod_r	192 → 192.15 → 192.15.1
3	E	e6vmeE1	E:16-117	VPS28	192 → 192.15 → 192.15.1
4	F	e6vmeF1	F:312-388	Vps23_core	192 → 192.15 → 192.15.1
5	G	e6vmeG1	G:314-388	Vps23_core	192 → 192.15 → 192.15.1
6	H	e6vmeH1	H:312-387	Vps23_core	192 → 192.15 → 192.15.1
7	I	e6vmeI1	I:313-387	Vps23_core	192 → 192.15 → 192.15.1
8	J	e6vmeJ1	J:312-387	Vps23_core	192 → 192.15 → 192.15.1
9	K	e6vmeK1	K:102-166	Mod_r	192 → 192.15 → 192.15.1
10	L	e6vmeL1	L:102-166	Mod_r	192 → 192.15 → 192.15.1
11	M	e6vmeM1	M:101-165	Mod_r	192 → 192.15 → 192.15.1
12	N	e6vmeN1	N:99-165	Mod_r	192 → 192.15 → 192.15.1
13	O	e6vmeO1	O:103-164	Mod_r	192 → 192.15 → 192.15.1
14	U	e6vmeU1	U:17-118	VPS28	192 → 192.15 → 192.15.1
15	V	e6vmeV1	V:15-118	VPS28	192 → 192.15 → 192.15.1
16	W	e6vmeW1	W:14-118	VPS28	192 → 192.15 → 192.15.1
17	X	e6vmeX1	X:18-118	VPS28	192 → 192.15 → 192.15.1
18	Y	e6vmeY1	Y:19-118	VPS28	192 → 192.15 → 192.15.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors