ECODEvolutionary Classification of Protein Domains

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PDB 6VPV

ELECTRON MICROSCOPY33 chains39 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 0Photosystem I reaction center subunit XIview chain

1 domain

e6vpv01(0:4-163)

Chain 1Photosystem I P700 chlorophyll a apoprotein A1view chain

2 domains

e6vpv11(1:11-422)e6vpv12(1:423-751)

Chain 2Photosystem I P700 chlorophyll a apoprotein A2view chain

2 domains

e6vpv21(2:5-412)e6vpv22(2:413-741)

Chain 3Photosystem I iron-sulfur centerview chain

1 domain

e6vpv31(3:2-81)

Chain 4Photosystem I reaction center subunit IIview chain

1 domain

e6vpv41(4:3-141)

Chain 5Photosystem I reaction center subunit IVview chain

1 domain

e6vpv51(5:2-69)

Chain 6PSI-Fview chain

1 domain

e6vpv61(6:1-141)

Chain 7Photosystem I reaction center subunit VIIIview chain

1 domain

e6vpv71(7:1-38)

Chain 8Photosystem I reaction center subunit IXview chain

1 domain

e6vpv81(8:2-40)

Chain 9Photosystem I reaction center subunit PsaKview chain

1 domain

e6vpv91(9:6-83)

Chain aPhotosystem I P700 chlorophyll a apoprotein A1view chain

2 domains

e6vpva1(a:11-422)e6vpva2(a:423-751)

Chain APhotosystem I P700 chlorophyll a apoprotein A1view chain

2 domains

e6vpvA1(A:11-422)e6vpvA2(A:423-751)

Chain bPhotosystem I P700 chlorophyll a apoprotein A2view chain

2 domains

e6vpvb1(b:5-412)e6vpvb2(b:413-741)

Chain BPhotosystem I P700 chlorophyll a apoprotein A2view chain

2 domains

e6vpvB1(B:5-412)e6vpvB2(B:413-741)

Chain cPhotosystem I iron-sulfur centerview chain

1 domain

e6vpvc1(c:2-81)

Chain CPhotosystem I iron-sulfur centerview chain

1 domain

e6vpvC1(C:2-81)

Chain dPhotosystem I reaction center subunit IIview chain

1 domain

e6vpvd1(d:3-141)

Chain DPhotosystem I reaction center subunit IIview chain

1 domain

e6vpvD1(D:3-141)

Chain ePhotosystem I reaction center subunit IVview chain

1 domain

e6vpve1(e:2-69)

Chain EPhotosystem I reaction center subunit IVview chain

1 domain

e6vpvE1(E:2-69)

Chain fPSI-Fview chain

1 domain

e6vpvf1(f:1-141)

Chain FPSI-Fview chain

1 domain

e6vpvF1(F:1-141)

Chain iPhotosystem I reaction center subunit VIIIview chain

1 domain

e6vpvi1(i:1-38)

Chain IPhotosystem I reaction center subunit VIIIview chain

1 domain

e6vpvI1(I:1-38)

Chain jPhotosystem I reaction center subunit IXview chain

1 domain

e6vpvj1(j:2-40)

Chain JPhotosystem I reaction center subunit IXview chain

1 domain

e6vpvJ1(J:2-40)

Chain kPhotosystem I reaction center subunit PsaKview chain

1 domain

e6vpvk1(k:6-83)

Chain KPhotosystem I reaction center subunit PsaKview chain

1 domain

e6vpvK1(K:6-83)

Chain lPhotosystem I reaction center subunit XIview chain

1 domain

e6vpvl1(l:4-163)

Chain LPhotosystem I reaction center subunit XIview chain

1 domain

e6vpvL1(L:4-163)

Chain mPhotosystem I reaction center subunit XIIview chain

1 domain

e6vpvm1(m:2-31)

Chain MPhotosystem I reaction center subunit XIIview chain

1 domain

e6vpvM1(M:2-31)

Chain zPhotosystem I reaction center subunit XIIview chain

1 domain

e6vpvz1(z:2-31)

All Domains (39)

#	Chain	Domain ID	Range	Family	Classification
1	0	e6vpv01	0:4-163	PsaL	5064 → 5064.1 → 5064.1.1
2	1	e6vpv11	1:11-422	PsaA_PsaB	5075 → 5075.1 → 5075.1.1
3	1	e6vpv12	1:423-751	PsaA_PsaB	5037 → 5037.1 → 5037.1.1
4	2	e6vpv21	2:5-412	PsaA_PsaB	5075 → 5075.1 → 5075.1.1
5	2	e6vpv22	2:413-741	PsaA_PsaB	5037 → 5037.1 → 5037.1.1
6	3	e6vpv31	3:2-81	Fer4+Fer4_7	205 → 205.1 → 205.1.1
7	4	e6vpv41	4:3-141	PsaD	834 → 834.1 → 834.1.1
8	5	e6vpv51	5:2-69	PSI_PsaE	4 → 4.1 → 4.1.1
9	6	e6vpv61	6:1-141	PSI_PsaF	5019 → 5019.1 → 5019.1.1
10	7	e6vpv71	7:1-38	PSI_8	5020 → 5020.1 → 5020.1.1
11	8	e6vpv81	8:2-40	PSI_PsaJ	5021 → 5021.1 → 5021.1.1
12	9	e6vpv91	9:6-83	PSI_PSAK	5063 → 5063.1 → 5063.1.1
13	a	e6vpva1	a:11-422	PsaA_PsaB	5075 → 5075.1 → 5075.1.1
14	a	e6vpva2	a:423-751	PsaA_PsaB	5037 → 5037.1 → 5037.1.1
15	A	e6vpvA1	A:11-422	PsaA_PsaB	5075 → 5075.1 → 5075.1.1
16	A	e6vpvA2	A:423-751	PsaA_PsaB	5037 → 5037.1 → 5037.1.1
17	b	e6vpvb1	b:5-412	PsaA_PsaB	5075 → 5075.1 → 5075.1.1
18	b	e6vpvb2	b:413-741	PsaA_PsaB	5037 → 5037.1 → 5037.1.1
19	B	e6vpvB1	B:5-412	PsaA_PsaB	5075 → 5075.1 → 5075.1.1
20	B	e6vpvB2	B:413-741	PsaA_PsaB	5037 → 5037.1 → 5037.1.1
21	c	e6vpvc1	c:2-81	Fer4+Fer4_7	205 → 205.1 → 205.1.1
22	C	e6vpvC1	C:2-81	Fer4+Fer4_7	205 → 205.1 → 205.1.1
23	d	e6vpvd1	d:3-141	PsaD	834 → 834.1 → 834.1.1
24	D	e6vpvD1	D:3-141	PsaD	834 → 834.1 → 834.1.1
25	e	e6vpve1	e:2-69	PSI_PsaE	4 → 4.1 → 4.1.1
26	E	e6vpvE1	E:2-69	PSI_PsaE	4 → 4.1 → 4.1.1
27	f	e6vpvf1	f:1-141	PSI_PsaF	5019 → 5019.1 → 5019.1.1
28	F	e6vpvF1	F:1-141	PSI_PsaF	5019 → 5019.1 → 5019.1.1
29	i	e6vpvi1	i:1-38	PSI_8	5020 → 5020.1 → 5020.1.1
30	I	e6vpvI1	I:1-38	PSI_8	5020 → 5020.1 → 5020.1.1
31	j	e6vpvj1	j:2-40	PSI_PsaJ	5021 → 5021.1 → 5021.1.1
32	J	e6vpvJ1	J:2-40	PSI_PsaJ	5021 → 5021.1 → 5021.1.1
33	k	e6vpvk1	k:6-83	PSI_PSAK	5063 → 5063.1 → 5063.1.1
34	K	e6vpvK1	K:6-83	PSI_PSAK	5063 → 5063.1 → 5063.1.1
35	l	e6vpvl1	l:4-163	PsaL	5064 → 5064.1 → 5064.1.1
36	L	e6vpvL1	L:4-163	PsaL	5064 → 5064.1 → 5064.1.1
37	m	e6vpvm1	m:2-31	PsaM	5022 → 5022.1 → 5022.1.1
38	M	e6vpvM1	M:2-31	PsaM	5022 → 5022.1 → 5022.1.1
39	z	e6vpvz1	z:2-31	PsaM	5022 → 5022.1 → 5022.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors