ECODEvolutionary Classification of Protein Domains

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PDB 6ZKK

ELECTRON MICROSCOPY45 chains46 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 1NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrialview chain

3 domains

e6zkk11(1:254-339)e6zkk12(1:340-438)e6zkk13(1:9-253)

Chain 2Mitochondrial complex I, 24 kDa subunitview chain

2 domains

e6zkk21(2:5-94)e6zkk22(2:95-217)

Chain 3NADH:ubiquinone oxidoreductase core subunit S1view chain

6 domains

e6zkk31(3:278-347,3:496-693)e6zkk32(3:82-136)e6zkk33(3:218-277)e6zkk34(3:348-495)e6zkk35(3:137-217)e6zkk36(3:6-81)

Chain 4Mitochondrial complex I, 49 kDa subunitview chain

3 domains

e6zkk41(4:119-161,4:360-432)e6zkk42(4:162-359)e6zkk43(4:78-118,4:433-463)

Chain 5NADH:ubiquinone oxidoreductase core subunit S3view chain

1 domain

e6zkk51(5:7-214)

Chain 6Mitochondrial complex I, PSST subunitview chain

1 domain

e6zkk61(6:24-179)

Chain 9Mitochondrial complex I, TYKY subunitview chain

1 domain

e6zkk91(9:1-176)

Chain ANADH-ubiquinone oxidoreductase chain 3view chain

1 domain

e6zkkA1(A:1-115)

Chain bMitochondrial complex I, 13 kDa subunitview chain

1 domain

e6zkkb1(b:1-95)

Chain cNADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrialview chain

1 domain

e6zkkc1(c:8-133)

Chain dNADH:ubiquinone oxidoreductase subunit A9view chain

1 domain

e6zkkd1(d:1-340)

Chain eNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2view chain

1 domain

e6zkke1(e:13-98)

Chain fMitochondrial complex I, B13 subunitview chain

1 domain

e6zkkf1(f:3-115)

Chain gNADH:ubiquinone oxidoreductase subunit A6view chain

1 domain

e6zkkg1(g:14-127)

Chain HNADH-ubiquinone oxidoreductase chain 1view chain

1 domain

e6zkkH1(H:1-318)

Chain iNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12view chain

1 domain

e6zkki1(i:1-145)

Chain jAcyl carrier proteinview chain

1 domain

e6zkkj1(j:5-86)

Chain JNADH-ubiquinone oxidoreductase chain 6view chain

1 domain

e6zkkJ1(J:1-175)

Chain kNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrialview chain

1 domain

e6zkkk1(k:1-320)

Chain KNADH-ubiquinone oxidoreductase chain 4Lview chain

1 domain

e6zkkK1(K:1-98)

Chain lNADH:ubiquinone oxidoreductase subunit S5view chain

1 domain

e6zkkl1(l:1-105)

Chain LNADH-ubiquinone oxidoreductase chain 5view chain

1 domain

e6zkkL1(L:1-606)

Chain mNADH:ubiquinone oxidoreductase subunit A3view chain

1 domain

e6zkkm1(m:4-83)

Chain MNADH-ubiquinone oxidoreductase chain 4view chain

1 domain

e6zkkM1(M:1-459)

Chain NNADH-ubiquinone oxidoreductase chain 2view chain

1 domain

e6zkkN1(N:1-347)

Chain oNADH dehydrogenase [ubiquinone] 1 subunit C2view chain

1 domain

e6zkko1(o:1-120)

Chain qMitochondrial complex I, B16.6 subunitview chain

1 domain

e6zkkq1(q:5-143)

Chain tNADH:ubiquinone oxidoreductase subunit B9view chain

1 domain

e6zkkt1(t:1-177)

Chain uNADH:ubiquinone oxidoreductase subunit B2view chain

1 domain

e6zkku1(u:5-69)

Chain WNADH:ubiquinone oxidoreductase subunit B5view chain

1 domain

e6zkkW1(W:5-143)

Chain xMitochondrial complex I, KFYI subunitview chain

1 domain

e6zkkx1(x:1-49)

Chain XAcyl carrier proteinview chain

1 domain

e6zkkX1(X:2-88)

Chain yMitochondrial complex I, MNLL subunitview chain

1 domain

e6zkky1(y:8-57)

Chain YNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8view chain

1 domain

e6zkkY1(Y:1-171)

Chain zMitochondrial complex I, MWFE subunitview chain

1 domain

e6zkkz1(z:1-70)

Chain ZMitochondrial complex I, PDSW subunitview chain

1 domain

e6zkkZ1(Z:3-173)

All Domains (46)

#	Chain	Domain ID	Range	Family	Classification
1	1	e6zkk11	1:254-339	SLBB_2	221 → 221.1 → 221.1.4
2	1	e6zkk12	1:340-438	NADH_4Fe-4S	633 → 633.11 → 633.11.1
3	1	e6zkk13	1:9-253	Complex1_51K	4335 → 4335.1 → 4335.1.1
4	2	e6zkk21	2:5-94	2Fe-2S_thioredx	3697 → 3697.1 → 3697.1.1
5	2	e6zkk22	2:95-217	2Fe-2S_thioredx	2485 → 2485.1 → 2485.1.1
6	3	e6zkk31	3:278-347,3:496-693	Molybdopterin,NADH_dhqG_C	2003 → 2003.2 → 2003.2.1
7	3	e6zkk32	3:82-136	NADH-G_4Fe-4S_3	5100 → 5100.1 → 5100.1.1
8	3	e6zkk33	3:218-277	NDSU1_4Fe-4S	1001 → 1001.1 → 1001.1.1
9	3	e6zkk34	3:348-495	Molybdopterin	2003 → 2003.2 → 2003.2.1
10	3	e6zkk35	3:137-217	Nqo3_Fer4	205 → 205.1 → 205.1.1
11	3	e6zkk36	3:6-81	Fer2_4	221 → 221.1 → 221.1.1
12	4	e6zkk41	4:119-161,4:360-432	Complex1_49kDa	244 → 244.4 → 244.4.1
13	4	e6zkk42	4:162-359	Complex1_49kDa	4025 → 4025.1 → 4025.1.1
14	4	e6zkk43	4:78-118,4:433-463	Complex1_49kDa	244 → 244.4 → 244.4.1
15	5	e6zkk51	5:7-214	Complex1_30kDa	4272 → 4272.1 → 4272.1.1
16	6	e6zkk61	6:24-179	Oxidored_q6	2007 → 2007.1 → 2007.1.3
17	9	e6zkk91	9:1-176	Fer4+Fer4_7	205 → 205.1 → 205.1.1
18	A	e6zkkA1	A:1-115	Oxidored_q4	3456 → 3456.1 → 3456.1.1
19	b	e6zkkb1	b:1-95	zf-CHCC	375 → 375.1 → 375.1.8
20	c	e6zkkc1	c:8-133	NDUS4	3203 → 3203.1 → 3203.1.1
21	d	e6zkkd1	d:1-340	Epimerase	2003 → 2003.1 → 2003.1.1
22	e	e6zkke1	e:13-98	L51_S25_CI-B8	2485 → 2485.1 → 2485.1.1
23	f	e6zkkf1	f:3-115	ETC_C1_NDUFA5	6004 → 6004.1 → 6004.1.1
24	g	e6zkkg1	g:14-127	Complex1_LYR_2	1128 → 1128.1 → 1128.1.1
25	H	e6zkkH1	H:1-318	NADHdh	3281 → 3281.1 → 3281.1.2
26	i	e6zkki1	i:1-145	NDUFA12	1129 → 1129.1 → 1129.1.1
27	j	e6zkkj1	j:5-86	PP-binding	132 → 132.1 → 132.1.1
28	J	e6zkkJ1	J:1-175	Oxidored_q3	3579 → 3579.1 → 3579.1.1
29	k	e6zkkk1	k:1-320	dNK	2004 → 2004.1 → 2004.1.1
30	K	e6zkkK1	K:1-98	Oxidored_q2	3843 → 3843.1 → 3843.1.1
31	l	e6zkkl1	l:1-105	Ndufs5	5071 → 5071.2 → 5071.2.1
32	L	e6zkkL1	L:1-606	Proton_antipo_M,Proton_antipo_N,NADH5_C	3281 → 3281.1 → 3281.1.1
33	m	e6zkkm1	m:4-83	NADHdh_A3	1122 → 1122.1 → 1122.1.1
34	M	e6zkkM1	M:1-459	Proton_antipo_M,Oxidored_q5_N	3281 → 3281.1 → 3281.1.1
35	N	e6zkkN1	N:1-347	Proton_antipo_M,NADH_dehy_S2_C	3281 → 3281.1 → 3281.1.1
36	o	e6zkko1	o:1-120	NDUF_C2	1131 → 1131.1 → 1131.1.1
37	q	e6zkkq1	q:5-143	GRIM-19	1132 → 1132.1 → 1132.1.1
38	t	e6zkkt1	t:1-177	Complex1_LYR	1128 → 1128.1 → 1128.1.1
39	u	e6zkku1	u:5-69	NADH_B2	1123 → 1123.1 → 1123.1.1
40	W	e6zkkW1	W:5-143	NDUF_B5	1127 → 1127.1 → 1127.1.1
41	x	e6zkkx1	x:1-49	NADH_dh_m_C1	1124 → 1124.1 → 1124.1.1
42	X	e6zkkX1	X:2-88	PP-binding	132 → 132.1 → 132.1.1
43	y	e6zkky1	y:8-57	NADH_oxidored	1125 → 1125.1 → 1125.1.1
44	Y	e6zkkY1	Y:1-171	CHCH	568 → 568.1 → 568.1.1
45	z	e6zkkz1	z:1-70	MWFE	1126 → 1126.1 → 1126.1.1
46	Z	e6zkkZ1	Z:3-173	NDUFB10	1130 → 1130.1 → 1130.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors