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PDB 6ZQE

ELECTRON MICROSCOPY62 chains84 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain CArRNA 2'-O-methyltransferase fibrillarinview chain
1 domain
Chain CBrRNA 2'-O-methyltransferase fibrillarinview chain
1 domain
Chain CF13 kDa ribonucleoprotein-associated proteinview chain
1 domain
Chain CG13 kDa ribonucleoprotein-associated proteinview chain
1 domain
Chain CHRibosomal RNA-processing protein 9view chain
1 domain
Chain CIU3 small nucleolar ribonucleoprotein protein IMP3view chain
1 domain
Chain CJU3 small nucleolar ribonucleoprotein protein IMP4view chain
1 domain
Chain CMRNA 3'-terminal phosphate cyclase-like proteinview chain
2 domains
Chain CNRibosomal RNA-processing protein 7view chain
1 domain
Chain DA40S ribosomal protein S1-Aview chain
2 domains
Chain Db40S ribosomal protein S27-Aview chain
1 domain
Chain Dc40S ribosomal protein S28-Aview chain
1 domain
Chain DF40S ribosomal protein S5view chain
1 domain
Chain DG40S ribosomal protein S6-Aview chain
1 domain
Chain DH40S ribosomal protein S7-Aview chain
2 domains
Chain DI40S ribosomal protein S8-Aview chain
1 domain
Chain DJ40S ribosomal protein S9-Aview chain
1 domain
Chain DL40S ribosomal protein S11-Aview chain
1 domain
Chain DN40S ribosomal protein S13view chain
2 domains
Chain DO40S ribosomal protein S14-Aview chain
1 domain
Chain DQ40S ribosomal protein S16-Aview chain
1 domain
Chain DS40S ribosomal protein S18-Aview chain
1 domain
Chain DT40S ribosomal protein S19-Aview chain
1 domain
Chain DW40S ribosomal protein S22-Aview chain
2 domains
Chain DX40S ribosomal protein S23-Aview chain
1 domain
Chain DY40S ribosomal protein S24-Aview chain
1 domain
Chain JFRibosomal RNA small subunit methyltransferase NEP1view chain
1 domain
Chain JGRibosomal RNA small subunit methyltransferase NEP1view chain
1 domain
Chain JHEssential nuclear protein 1view chain
1 domain
Chain JJPre-rRNA-processing protein PNO1view chain
2 domains
Chain JLDimethyladenosine transferaseview chain
2 domains
Chain UDU3 small nucleolar RNA-associated protein 4view chain
2 domains
Chain UEU3 small nucleolar RNA-associated protein 9view chain
1 domain
Chain UIU3 small nucleolar RNA-associated protein 5view chain
2 domains
Chain UJU3 small nucleolar RNA-associated protein 10view chain
1 domain
Chain UMU3 small nucleolar RNA-associated protein 13view chain
3 domains
Chain UOU3 small nucleolar RNA-associated protein 15view chain
2 domains
Chain URU3 small nucleolar RNA-associated protein 18view chain
1 domain
Chain UUU3 small nucleolar RNA-associated protein 21view chain
2 domains
Chain UXrRNA-processing protein FCF1view chain
1 domain

All Domains (84)

#ChainDomain IDRangeFamilyClassification
1CAe6zqeCA1CA:80-326Fibrillarin2003 → 2003.1 → 2003.1.5
2CBe6zqeCB1CB:85-324Fibrillarin2003 → 2003.1 → 2003.1.5
3CDe6zqeCD1CD:3-167NOP5NT3407 → 3407.1 → 3407.1.1
4CDe6zqeCD2CD:168-298Nop606 → 606.1 → 606.1.1
5CDe6zqeCD3CD:288-329,CD:370-415Nop102 → 102.1 → 102.1.4
6CEe6zqeCE1CE:3-18,CE:38-154NOP5NT, Nop5_56-rel_N_Arc3407 → 3407.1 → 3407.1.1
7CEe6zqeCE2CE:285-403Nop102 → 102.1 → 102.1.4
8CEe6zqeCE3CE:155-284Nop606 → 606.1 → 606.1.1
9CFe6zqeCF1CF:5-125Ribosomal_L7Ae301 → 301.1 → 301.1.1
10CGe6zqeCG1CG:5-125Ribosomal_L7Ae301 → 301.1 → 301.1.1
11CHe6zqeCH1CH:115-572WD405 → 5.1 → 5.1.4
12CIe6zqeCI1CI:2-183Ribosomal_S4,S4221 → 221.1 → 221.1.2
13CJe6zqeCJ1CJ:84-267Brix7502 → 7502.1 → 7502.1.1
14CLe6zqeCL1CL:54-235AAA, GTP_EFTU2004 → 2004.1 → 2004.1.1
15CLe6zqeCL2CL:929-1016RIBIOP_C1 → 1.1 → 1.1.7
16CLe6zqeCL3CL:818-928RIBIOP_C1 → 1.1 → 1.1.8
17CLe6zqeCL4CL:236-305,CL:614-636,CL:787-817AARP2CN1 → 1.1 → 1.1.7
18CMe6zqeCM1CM:7-182,CM:287-366RTC328 → 328.6 → 328.6.1
19CMe6zqeCM2CM:183-287RTC_insert2485 → 2485.2 → 2485.2.1
20CNe6zqeCN1CN:3-231RRP7,RRM_Rrp7304 → 304.9 → 304.9.1
21DAe6zqeDA1DA:2-113Ribosomal_S3Ae239 → 239.5 → 239.5.1
22DAe6zqeDA2DA:114-245Ribosomal_S3Ae230 → 230.6 → 230.6.1
23Dbe6zqeDb1Db:2-82Ribosomal_S27e375 → 375.1 → 375.1.1
24Dce6zqeDc1Dc:5-67Ribosomal_S28e2 → 2.1 → 2.1.1
25DEe6zqeDE1DE:117-175Ribosomal_S4e2 → 2.1 → 2.1.1
26DEe6zqeDE2DE:2-116Ribosomal_S4e,S4,RS4NT221 → 221.1 → 221.1.2
27DEe6zqeDE3DE:176-247KOW,40S_S4_C4 → 4.1 → 4.1.1
28DFe6zqeDF1DF:13-225Ribosomal_S7167 → 167.1 → 167.1.1
29DGe6zqeDG1DG:1-218Ribosomal_S6e239 → 239.1 → 239.1.1
30DHe6zqeDH1DH:106-187Ribosomal_S7e327 → 327.18 → 327.18.1
31DHe6zqeDH2DH:4-105Ribosomal_S7e327 → 327.18 → 327.18.1
32DIe6zqeDI1DI:2-123,DI:146-200Ribosomal_S8e3174 → 3174.1 → 3174.1.1
33DJe6zqeDJ1DJ:2-186Ribosomal_S4,S4221 → 221.1 → 221.1.2
34DLe6zqeDL1DL:6-145Ribosomal_S17,Ribosomal_S17_N2 → 2.1 → 2.1.1
35DNe6zqeDN1DN:2-82Ribosomal_S13_N101 → 101.40 → 101.40.1
36DNe6zqeDN2DN:83-151Ribosomal_S15616 → 616.1 → 616.1.1
37DOe6zqeDO1DO:11-137Ribosomal_S112484 → 2484.1 → 2484.1.1
38DQe6zqeDQ1DQ:3-127Ribosomal_S9212 → 212.1 → 212.1.1
39DSe6zqeDS1DS:2-120Ribosomal_S13102 → 102.2 → 102.2.1
40DTe6zqeDT1DT:2-144Ribosomal_S19e101 → 101.1 → 101.1.2
41DWe6zqeDW1DW:2-67Ribosomal_S8320 → 320.2 → 320.2.1
42DWe6zqeDW2DW:68-130Ribosomal_S84988 → 4988.1 → 4988.1.1
43DXe6zqeDX1DX:2-144Ribosom_S12_S232 → 2.1 → 2.1.1
44DYe6zqeDY1DY:2-135Ribosomal_S24e304 → 304.109 → 304.109.1
45JDe6zqeJD1JD:377-586DEAD2004 → 2004.1 → 2004.1.1
46JDe6zqeJD2JD:587-646,JD:710-840Helicase_C2004 → 2004.1 → 2004.1.1
47JDe6zqeJD3JD:841-906HA2_N101 → 101.1 → 101.1.2
48JDe6zqeJD4JD:907-947,JD:977-1073HA2_C4156 → 4156.1 → 4156.1.1
49JDe6zqeJD5JD:1074-1187OB_NTP_bind2 → 2.1 → 2.1.1
50JDe6zqeJD6JD:1188-12632.1.1.02 → 2.1 → 2.1.1
51JFe6zqeJF1JF:29-251EMG12488 → 2488.1 → 2488.1.1
52JGe6zqeJG1JG:16-251EMG12488 → 2488.1 → 2488.1.1
53JHe6zqeJH1JH:205-466Bystin109 → 109.4 → 109.4.1
54JJe6zqeJJ1JJ:178-273KH_PNO1_2nd327 → 327.11 → 327.11.2
55JJe6zqeJJ2JJ:90-177KH_8327 → 327.11 → 327.11.2
56JLe6zqeJL1JL:217-318RrnaAD102 → 102.2 → 102.2.1
57JLe6zqeJL2JL:36-216RrnaAD, Methyltransf_252003 → 2003.1 → 2003.1.5
58UAe6zqeUA1UA:735-856Utp12109 → 109.54 → 109.54.1
59UAe6zqeUA2UA:2-223,UA:245-343WD40,ANAPC4_WD405 → 5.1 → 5.1.4
60UAe6zqeUA3UA:343-632,UA:675-734WD40,ANAPC4_WD405 → 5.1 → 5.1.4
61UDe6zqeUD1UD:375-666,UD:731-7765.1.4.05 → 5.1 → 5.1.4
62UDe6zqeUD2UD:29-374WD405 → 5.1 → 5.1.4
63UEe6zqeUE1UE:428-515109.54.1.0109 → 109.54 → 109.54.1
64UIe6zqeUI1UI:3-3725.1.5.05 → 5.1 → 5.1.5
65UIe6zqeUI2UI:434-557Utp12109 → 109.54 → 109.54.1
66UJe6zqeUJ1UJ:3-421U3snoRNP10109 → 109.4 → 109.4.1
67ULe6zqeUL1UL:41-275,UL:321-386WD40, Beta-prop_WDR3_1st5 → 5.1 → 5.1.4
68ULe6zqeUL2UL:745-773,UL:793-918Utp12109 → 109.54 → 109.54.1
69ULe6zqeUL3UL:5-40,UL:386-687WD40, Beta-prop_WDR3_2nd5 → 5.1 → 5.1.4
70UMe6zqeUM1UM:332-649WD40, Beta-prop_WDR75_2nd5 → 5.1 → 5.1.4
71UMe6zqeUM2UM:7-331WD405 → 5.1 → 5.1.4
72UMe6zqeUM3UM:650-817Utp13109 → 109.54 → 109.54.1
73UOe6zqeUO1UO:2-364WD405 → 5.1 → 5.1.5
74UOe6zqeUO2UO:388-512UTP15_C109 → 109.54 → 109.54.1
75URe6zqeUR1UR:235-591WD405 → 5.1 → 5.1.4
76UUe6zqeUU1UU:350-684WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd5 → 5.1 → 5.1.4
77UUe6zqeUU2UU:20-349ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st5 → 5.1 → 5.1.4
78UVe6zqeUV1UV:357-514Nrap_D2102 → 102.1 → 102.1.3
79UVe6zqeUV2UV:699-905Nrap_D4316 → 316.1 → 316.1.1
80UVe6zqeUV3UV:906-983,UV:1010-1091Nrap_D5102 → 102.1 → 102.1.3
81UVe6zqeUV4UV:515-698Nrap_D3304 → 304.20 → 304.20.1
82UVe6zqeUV5UV:81-356Nrap316 → 316.1 → 316.1.1
83UVe6zqeUV6UV:1092-1237Nrap_D6304 → 304.20 → 304.20.1
84UXe6zqeUX1UX:4-21,UX:41-189Fcf12006 → 2006.1 → 2006.1.4

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors