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PDB 7DVQ

ELECTRON MICROSCOPY49 chains66 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 1Splicing factor 3B subunit 1view chain
1 domain
Chain 4Splicing factor 3B subunit 4view chain
1 domain
Chain 5Splicing factor 3B subunit 6view chain
1 domain
Chain 6PHD finger-like domain-containing protein 5Aview chain
1 domain
Chain 7Splicing factor 3B subunit 5view chain
1 domain
Chain 8Serine/arginine repetitive matrix protein 1view chain
1 domain
Chain 9RING-type E3 ubiquitin-protein ligase PPIL2view chain
3 domains
Chain aSmall nuclear ribonucleoprotein Sm D3view chain
1 domain
Chain bSmall nuclear ribonucleoprotein-associated proteins B and B'view chain
1 domain
Chain cSmall nuclear ribonucleoprotein Sm D1view chain
1 domain
Chain C116 kDa U5 small nuclear ribonucleoprotein componentview chain
5 domains
Chain dSmall nuclear ribonucleoprotein Sm D2view chain
1 domain
Chain eSmall nuclear ribonucleoprotein Eview chain
1 domain
Chain EU5 small nuclear ribonucleoprotein 40 kDa proteinview chain
1 domain
Chain fSmall nuclear ribonucleoprotein Fview chain
1 domain
Chain gSmall nuclear ribonucleoprotein Gview chain
1 domain
Chain hSmall nuclear ribonucleoprotein Sm D3view chain
1 domain
Chain iSmall nuclear ribonucleoprotein-associated proteins B and B'view chain
1 domain
Chain jSmall nuclear ribonucleoprotein Sm D1view chain
1 domain
Chain JCrooked neck-like protein 1view chain
1 domain
Chain kSmall nuclear ribonucleoprotein Sm D2view chain
1 domain
Chain lSmall nuclear ribonucleoprotein Eview chain
1 domain
Chain LCell division cycle 5-like proteinview chain
2 domains
Chain mSmall nuclear ribonucleoprotein Fview chain
1 domain
Chain MRING finger protein 113Aview chain
1 domain
Chain nSmall nuclear ribonucleoprotein Gview chain
1 domain
Chain TPleiotropic regulator 1view chain
1 domain
Chain VPre-mRNA-splicing factor CWC22 homologview chain
2 domains
Chain xPre-mRNA-splicing factor ATP-dependent RNA helicase DHX16view chain
4 domains
Chain XSmad nuclear-interacting protein 1view chain
1 domain
Chain YRNA-binding motif protein, X-linked 2view chain
1 domain
Chain zPeptidyl-prolyl cis-trans isomerase CWC27 homologview chain
1 domain

All Domains (66)

#ChainDomain IDRangeFamilyClassification
11e7dvq111:463-485,1:487-1304PPP2R1A-like_HEAT109 → 109.4 → 109.4.1
23e7dvq313:404-441,3:773-1132CPSF_A5 → 5.1 → 5.1.4
33e7dvq323:1-403MMS1_N5 → 5.1 → 5.1.4
43e7dvq333:1133-1217CPSF_A101 → 101.1 → 101.1.1
53e7dvq343:442-772Beta-prop_RSE1_2nd5 → 5.1 → 5.1.4
64e7dvq414:12-89RRM_1304 → 304.9 → 304.9.1
75e7dvq515:12-120RRM_1304 → 304.9 → 304.9.1
86e7dvq616:2-106PHF5377 → 377.1 → 377.1.4
97e7dvq717:1-81SF3b101106 → 1106.1 → 1106.1.1
108e7dvq818:27-126PWI592 → 592.1 → 592.1.1
119e7dvq919:280-437Pro_isomerase75 → 75.1 → 75.1.1
129e7dvq929:116-159304.9.1.0304 → 304.9 → 304.9.1
139e7dvq939:43-93376.1.1.0376 → 376.1 → 376.1.1
14ae7dvqa1a:3-85LSM4 → 4.1 → 4.1.1
15Ae7dvqA1A:1183-1502U6-snRNA_bdg,U5_2-snRNA_bdg4967 → 4967.1 → 4967.1.1
16Ae7dvqA2A:2067-2314JAB,PROCT2492 → 2492.1 → 2492.1.1
17Ae7dvqA3A:811-1182RRM_4304 → 304.48 → 304.48.1
18Ae7dvqA4A:1755-2015PRP8_domainIV2484 → 2484.1 → 2484.1.1
19Ae7dvqA5A:27-810PRO8NT,PROCN1038 → 1038.1 → 1038.1.1
20Ae7dvqA6A:1503-1754U6-snRNA_bdg2008 → 2008.1 → 2008.1.1
21be7dvqb1b:8-89LSM4 → 4.1 → 4.1.1
22ce7dvqc1c:1-82LSM4 → 4.1 → 4.1.1
23Ce7dvqC1C:660-828EFG_IV212 → 212.1 → 212.1.1
24Ce7dvqC2C:440-580GTP_EFTU_D21 → 1.1 → 1.1.7
25Ce7dvqC3C:829-957EFG_C304 → 304.24 → 304.24.1
26Ce7dvqC4C:581-659EFG_III304 → 304.24 → 304.24.1
27Ce7dvqC5C:56-439GTP_EFTU,EFTUD22004 → 2004.1 → 2004.1.1
28de7dvqd1d:20-116LSM4 → 4.1 → 4.1.1
29De7dvqD1D:987-1125Sec634156 → 4156.1 → 4156.1.1
30De7dvqD2D:180-182,D:404-682DEAD2004 → 2004.1 → 2004.1.1
31De7dvqD3D:1181-1318Sec6311 → 11.1 → 11.1.1
32De7dvqD4D:102-179BRR2_plug592 → 592.6 → 592.6.1
33De7dvqD5D:1125-1181102.5.1.0102 → 102.5 → 102.5.1
34De7dvqD6D:1955-2015102.5.1.0102 → 102.5 → 102.5.1
35De7dvqD7D:1521-1723Helicase_C2004 → 2004.1 → 2004.1.1
36De7dvqD8D:1319-1520DEAD2004 → 2004.1 → 2004.1.1
37De7dvqD9D:1722-1806SNRNP200_wHTH101 → 101.1 → 101.1.2
38De7dvqD10D:2015-2125Sec6311 → 11.1 → 11.1.1
39De7dvqD11D:888-986SNRNP200_wHTH101 → 101.1 → 101.1.2
40De7dvqD12D:1807-1955Sec634156 → 4156.1 → 4156.1.1
41De7dvqD13D:683-888Helicase_C2004 → 2004.1 → 2004.1.1
42ee7dvqe1e:14-92LSM4 → 4.1 → 4.1.1
43Ee7dvqE1E:58-356WD40, Beta-prop_NOL10_N5 → 5.1 → 5.1.4
44fe7dvqf1f:2-75LSM4 → 4.1 → 4.1.1
45ge7dvqg1g:3-76LSM4 → 4.1 → 4.1.1
46he7dvqh1h:4-85LSM4 → 4.1 → 4.1.1
47ie7dvqi1i:4-89LSM4 → 4.1 → 4.1.1
48je7dvqj1j:1-82LSM4 → 4.1 → 4.1.1
49Je7dvqJ1J:216-802HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_C, PRP6_TPR109 → 109.4 → 109.4.1
50ke7dvqk1k:20-116LSM4 → 4.1 → 4.1.1
51le7dvql1l:14-92LSM4 → 4.1 → 4.1.1
52Le7dvqL1L:62-109Myb_DNA-binding101 → 101.1 → 101.1.1
53Le7dvqL2L:9-64Myb_DNA-binding101 → 101.1 → 101.1.1
54me7dvqm1m:2-75LSM4 → 4.1 → 4.1.1
55Me7dvqM1M:191-226zf-CCCH906 → 906.1 → 906.1.1
56ne7dvqn1n:4-76LSM4 → 4.1 → 4.1.1
57Te7dvqT1T:184-503WD405 → 5.1 → 5.1.4
58Ve7dvqV1V:440-649MA3109 → 109.4 → 109.4.1
59Ve7dvqV2V:149-406MIF4G109 → 109.4 → 109.4.1
60xe7dvqx1x:386-574DEAD2004 → 2004.1 → 2004.1.1
61xe7dvqx2x:751-931HA2_N,HA2_C4156 → 4156.1 → 4156.1.1
62xe7dvqx3x:575-750Helicase_C2004 → 2004.1 → 2004.1.1
63xe7dvqx4x:932-1017OB_NTP_bind2 → 2.1 → 2.1.1
64Xe7dvqX1X:243-375FHA73 → 73.1 → 73.1.1
65Ye7dvqY1Y:1-140RRM_1304 → 304.9 → 304.9.1
66ze7dvqz1z:2-178Pro_isomerase75 → 75.1 → 75.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors