ECODEvolutionary Classification of Protein Domains

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PDB 7EMF

ELECTRON MICROSCOPY27 chains17 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 1Mediator of RNA polymerase II transcription subunit 28view chain

1 domain

e7emf11(1:42-146)

Chain 4Mediator of RNA polymerase II transcription subunit 31view chain

1 domain

e7emf41(4:10-122)

Chain FMediator of RNA polymerase II transcription subunit 6view chain

1 domain

e7emfF1(F:7-149)

Chain GMediator of RNA polymerase II transcription subunit 7view chain

2 domains

e7emfG1(G:63-175)e7emfG2(G:15-62)

Chain HIsoform 2 of Mediator of RNA polymerase II transcription subunit 8view chain

1 domain

e7emfH1(H:4-78,H:102-160)

Chain PIsoform 2 of Mediator of RNA polymerase II transcription subunit 16view chain

1 domain

e7emfP1(P:13-314,P:335-408,P:429-458)

Chain RMediator of RNA polymerase II transcription subunit 18view chain

1 domain

e7emfR1(R:16-206)

Chain TMediator of RNA polymerase II transcription subunit 20view chain

1 domain

e7emfT1(T:1-205)

Chain UMediator of RNA polymerase II transcription subunit 21view chain

1 domain

e7emfU1(U:1-133)

Chain VMediator of RNA polymerase II transcription subunit 22view chain

1 domain

e7emfV1(V:10-139)

Chain WMediator of RNA polymerase II transcription subunit 23view chain

5 domains

e7emfW01(W:1-220)e7emfW02(W:267-468)e7emfW03(W:469-752)e7emfW04(W:753-1034)e7emfW05(W:1035-1334)

Chain YMediator of RNA polymerase II transcription subunit 25view chain

1 domain

e7emfY1(Y:14-231)

All Domains (17)

#	Chain	Domain ID	Range	Family	Classification
1	1	e7emf11	1:42-146	Med28	4207 → 4207.1 → 4207.1.1
2	4	e7emf41	4:10-122	Med31	3548 → 3548.1 → 3548.1.1
3	F	e7emfF1	F:7-149	Med6	3195 → 3195.1 → 3195.1.1
4	G	e7emfG1	G:63-175	Med7	4207 → 4207.1 → 4207.1.2
5	G	e7emfG2	G:15-62	3548.1.1.0	3548 → 3548.1 → 3548.1.1
6	H	e7emfH1	H:4-78,H:102-160	Med8	3560 → 3560.1 → 3560.1.1
7	P	e7emfP1	P:13-314,P:335-408,P:429-458	WD domain, G-beta repeat / Mediator complex subunit 16, N-terminal	5 → 5.1 → 5.1.5
8	R	e7emfR1	R:16-206	Med18	868 → 868.1 → 868.1.1
9	T	e7emfT1	T:1-205	Med20	868 → 868.1 → 868.1.1
10	U	e7emfU1	U:1-133	Med21	4207 → 4207.1 → 4207.1.1
11	V	e7emfV1	V:10-139	Med22	3559 → 3559.1 → 3559.1.1
12	W	e7emfW01	W:1-220	Med23	109 → 109.4 → 109.4.1
13	W	e7emfW02	W:267-468	Med23	109 → 109.4 → 109.4.1
14	W	e7emfW03	W:469-752	Med23	109 → 109.4 → 109.4.1
15	W	e7emfW04	W:753-1034	Med23	109 → 109.4 → 109.4.1
16	W	e7emfW05	W:1035-1334	Med23	109 → 109.4 → 109.4.1
17	Y	e7emfY1	Y:14-231	Med25_VWA	2006 → 2006.1 → 2006.1.6

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors