ECODEvolutionary Classification of Protein Domains

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PDB 7N8O

ELECTRON MICROSCOPY42 chains44 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain aPhotosystem II protein D1 2view chain

1 domain

e7n8oa1(a:11-344)

Chain APhotosystem II protein D1 2view chain

1 domain

e7n8oA1(A:11-344)

Chain bPhotosystem II CP47 reaction center proteinview chain

2 domains

e7n8ob1(b:2-328,b:445-504)e7n8ob2(b:329-444)

Chain BPhotosystem II CP47 reaction center proteinview chain

2 domains

e7n8oB1(B:2-328,B:445-504)e7n8oB2(B:329-444)

Chain cPhotosystem II CP43 reaction center proteinview chain

1 domain

e7n8oc1(c:11-460)

Chain CPhotosystem II CP43 reaction center proteinview chain

1 domain

e7n8oC1(C:11-460)

Chain dPhotosystem II D2 proteinview chain

1 domain

e7n8od1(d:12-352)

Chain DPhotosystem II D2 proteinview chain

1 domain

e7n8oD1(D:12-352)

Chain eCytochrome b559 subunit alphaview chain

1 domain

e7n8oe1(e:3-80)

Chain ECytochrome b559 subunit alphaview chain

1 domain

e7n8oE1(E:3-80)

Chain fCytochrome b559 subunit betaview chain

1 domain

e7n8of1(f:10-44)

Chain FCytochrome b559 subunit betaview chain

1 domain

e7n8oF1(F:10-44)

Chain hPhotosystem II reaction center protein Hview chain

1 domain

e7n8oh1(h:2-64)

Chain HPhotosystem II reaction center protein Hview chain

1 domain

e7n8oH1(H:2-64)

Chain iPhotosystem II reaction center protein Iview chain

1 domain

e7n8oi1(i:1-36)

Chain IPhotosystem II reaction center protein Iview chain

1 domain

e7n8oI1(I:1-36)

Chain jPhotosystem II reaction center protein Jview chain

1 domain

e7n8oj1(j:1-39)

Chain JPhotosystem II reaction center protein Jview chain

1 domain

e7n8oJ1(J:1-39)

Chain kPhotosystem II reaction center protein Kview chain

1 domain

e7n8ok1(k:9-45)

Chain KPhotosystem II reaction center protein Kview chain

1 domain

e7n8oK1(K:9-45)

Chain lPhotosystem II reaction center protein Lview chain

1 domain

e7n8ol1(l:1-39)

Chain LPhotosystem II reaction center protein Lview chain

1 domain

e7n8oL1(L:1-39)

Chain mPhotosystem II reaction center protein Mview chain

1 domain

e7n8om1(m:1-31)

Chain MPhotosystem II reaction center protein Mview chain

1 domain

e7n8oM1(M:1-31)

Chain oPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e7n8oo1(o:31-273)

Chain OPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e7n8oO1(O:31-273)

Chain qSll1638 proteinview chain

1 domain

e7n8oq1(q:29-147)

Chain QSll1638 proteinview chain

1 domain

e7n8oQ1(Q:29-147)

Chain rPhotosystem II protein Yview chain

1 domain

e7n8or1(r:2-35)

Chain RPhotosystem II protein Yview chain

1 domain

e7n8oR1(R:2-35)

Chain tPhotosystem II reaction center protein Tview chain

1 domain

e7n8ot1(t:1-30)

Chain TPhotosystem II reaction center protein Tview chain

1 domain

e7n8oT1(T:1-30)

Chain uPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e7n8ou1(u:37-131)

Chain UPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e7n8oU1(U:37-131)

Chain vCytochrome c-550view chain

1 domain

e7n8ov1(v:26-160)

Chain VCytochrome c-550view chain

1 domain

e7n8oV1(V:26-160)

Chain xPhotosystem II reaction center X proteinview chain

1 domain

e7n8ox1(x:1-38)

Chain XPhotosystem II reaction center X proteinview chain

1 domain

e7n8oX1(X:1-38)

Chain yPhotosystem II reaction center protein Ycf12view chain

1 domain

e7n8oy1(y:62-93)

Chain YPhotosystem II reaction center protein Ycf12view chain

1 domain

e7n8oY1(Y:62-93)

Chain zPhotosystem II reaction center protein Zview chain

1 domain

e7n8oz1(z:2-61)

Chain ZPhotosystem II reaction center protein Zview chain

1 domain

e7n8oZ1(Z:2-61)

All Domains (44)

#	Chain	Domain ID	Range	Family	Classification
1	a	e7n8oa1	a:11-344	Photo_RC	5037 → 5037.1 → 5037.1.1
2	A	e7n8oA1	A:11-344	Photo_RC	5037 → 5037.1 → 5037.1.1
3	b	e7n8ob1	b:2-328,b:445-504	PSII	5075 → 5075.1 → 5075.1.1
4	b	e7n8ob2	b:329-444	PSII	3744 → 3744.1 → 3744.1.1
5	B	e7n8oB1	B:2-328,B:445-504	PSII	5075 → 5075.1 → 5075.1.1
6	B	e7n8oB2	B:329-444	PSII	3744 → 3744.1 → 3744.1.1
7	c	e7n8oc1	c:11-460	PSII	5075 → 5075.1 → 5075.1.1
8	C	e7n8oC1	C:11-460	PSII	5075 → 5075.1 → 5075.1.1
9	d	e7n8od1	d:12-352	Photo_RC	5037 → 5037.1 → 5037.1.1
10	D	e7n8oD1	D:12-352	Photo_RC	5037 → 5037.1 → 5037.1.1
11	e	e7n8oe1	e:3-80	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
12	E	e7n8oE1	E:3-80	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
13	f	e7n8of1	f:10-44	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
14	F	e7n8oF1	F:10-44	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
15	h	e7n8oh1	h:2-64	PsbH	5032 → 5032.1 → 5032.1.1
16	H	e7n8oH1	H:2-64	PsbH	5032 → 5032.1 → 5032.1.1
17	i	e7n8oi1	i:1-36	PsbI	5035 → 5035.1 → 5035.1.1
18	I	e7n8oI1	I:1-36	PsbI	5035 → 5035.1 → 5035.1.1
19	j	e7n8oj1	j:1-39	PsbJ	5031 → 5031.1 → 5031.1.1
20	J	e7n8oJ1	J:1-39	PsbJ	5031 → 5031.1 → 5031.1.1
21	k	e7n8ok1	k:9-45	PsbK	5034 → 5034.1 → 5034.1.1
22	K	e7n8oK1	K:9-45	PsbK	5034 → 5034.1 → 5034.1.1
23	l	e7n8ol1	l:1-39	PsbL	5030 → 5030.1 → 5030.1.1
24	L	e7n8oL1	L:1-39	PsbL	5030 → 5030.1 → 5030.1.1
25	m	e7n8om1	m:1-31	PsbM	5033 → 5033.1 → 5033.1.1
26	M	e7n8oM1	M:1-31	PsbM	5033 → 5033.1 → 5033.1.1
27	o	e7n8oo1	o:31-273	MSP	5084 → 5084.1 → 5084.1.1
28	O	e7n8oO1	O:31-273	MSP	5084 → 5084.1 → 5084.1.1
29	q	e7n8oq1	q:29-147	PsbQ	601 → 601.18 → 601.18.1
30	Q	e7n8oQ1	Q:29-147	PsbQ	601 → 601.18 → 601.18.1
31	r	e7n8or1	r:2-35	PsbY	6106 → 6106.1 → 6106.1.1
32	R	e7n8oR1	R:2-35	PsbY	6106 → 6106.1 → 6106.1.1
33	t	e7n8ot1	t:1-30	PsbT	3390 → 3390.1 → 3390.1.1
34	T	e7n8oT1	T:1-30	PsbT	3390 → 3390.1 → 3390.1.1
35	u	e7n8ou1	u:37-131	PsbU	102 → 102.1 → 102.1.1
36	U	e7n8oU1	U:37-131	PsbU	102 → 102.1 → 102.1.1
37	v	e7n8ov1	v:26-160	Cytochrom_C550	107 → 107.1 → 107.1.1
38	V	e7n8oV1	V:26-160	Cytochrom_C550	107 → 107.1 → 107.1.1
39	x	e7n8ox1	x:1-38	PsbX	3493 → 3493.1 → 3493.1.1
40	X	e7n8oX1	X:1-38	PsbX	3493 → 3493.1 → 3493.1.1
41	y	e7n8oy1	y:62-93	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
42	Y	e7n8oY1	Y:62-93	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
43	z	e7n8oz1	z:2-61	Ycf9	5044 → 5044.1 → 5044.1.1
44	Z	e7n8oZ1	Z:2-61	Ycf9	5044 → 5044.1 → 5044.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors