ECODEvolutionary Classification of Protein Domains

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PDB 7OAY

X-RAY DIFFRACTION2.34 Å12 chains12 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AAASpike protein S1view chain

1 domain

e7oayAAA1(AAA:331-528)

Chain BBBF2 nanobodyview chain

1 domain

e7oayBBB1(BBB:1-125)

Chain CCCSpike protein S1view chain

1 domain

e7oayCCC1(CCC:331-528)

Chain DDDF2 nanobodyview chain

1 domain

e7oayDDD1(DDD:1-125)

Chain EEESpike protein S1view chain

1 domain

e7oayEEE1(EEE:332-528)

Chain FFFF2 nanobodyview chain

1 domain

e7oayFFF1(FFF:1-124)

Chain GGGSpike protein S1view chain

1 domain

e7oayGGG1(GGG:333-528)

Chain HHHF2 nanobodyview chain

1 domain

e7oayHHH1(HHH:1-125)

Chain IIISpike protein S1view chain

1 domain

e7oayIII1(III:331-528)

Chain JJJF2 nanobodyview chain

1 domain

e7oayJJJ1(JJJ:1-125)

Chain KKKSpike protein S1view chain

1 domain

e7oayKKK1(KKK:332-528)

Chain LLLF2 nanobodyview chain

1 domain

e7oayLLL1(LLL:1-125)

All Domains (12)

#	Chain	Domain ID	Range	Family	Classification
1	AAA	e7oayAAA1	AAA:331-528	bCoV_S1_RBD	4169 → 4169.1 → 4169.1.1
2	BBB	e7oayBBB1	BBB:1-125	V-set	11 → 11.1 → 11.1.1
3	CCC	e7oayCCC1	CCC:331-528	bCoV_S1_RBD	4169 → 4169.1 → 4169.1.1
4	DDD	e7oayDDD1	DDD:1-125	V-set	11 → 11.1 → 11.1.1
5	EEE	e7oayEEE1	EEE:332-528	bCoV_S1_RBD	4169 → 4169.1 → 4169.1.1
6	FFF	e7oayFFF1	FFF:1-124	V-set	11 → 11.1 → 11.1.1
7	GGG	e7oayGGG1	GGG:333-528	bCoV_S1_RBD	4169 → 4169.1 → 4169.1.1
8	HHH	e7oayHHH1	HHH:1-125	V-set	11 → 11.1 → 11.1.1
9	III	e7oayIII1	III:331-528	bCoV_S1_RBD	4169 → 4169.1 → 4169.1.1
10	JJJ	e7oayJJJ1	JJJ:1-125	V-set	11 → 11.1 → 11.1.1
11	KKK	e7oayKKK1	KKK:332-528	bCoV_S1_RBD	4169 → 4169.1 → 4169.1.1
12	LLL	e7oayLLL1	LLL:1-125	V-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors