ECODEvolutionary Classification of Protein Domains

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PDB 7PNK

ELECTRON MICROSCOPY44 chains44 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain aPhotosystem II protein D1view chain

1 domain

e7pnka1(a:9-344)

Chain APhotosystem II protein D1view chain

1 domain

e7pnkA1(A:9-344)

Chain bPhotosystem II CP47 reaction center proteinview chain

2 domains

e7pnkb1(b:2-328,b:445-485)e7pnkb2(b:329-444)

Chain BPhotosystem II CP47 reaction center proteinview chain

2 domains

e7pnkB1(B:329-444)e7pnkB2(B:2-328,B:445-485)

Chain cPhotosystem II CP43 reaction center proteinview chain

1 domain

e7pnkc1(c:13-461)

Chain CPhotosystem II CP43 reaction center proteinview chain

1 domain

e7pnkC1(C:13-461)

Chain dPhotosystem II D2 proteinview chain

1 domain

e7pnkd1(d:5-352)

Chain DPhotosystem II D2 proteinview chain

1 domain

e7pnkD1(D:5-352)

Chain eCytochrome b559 subunit alphaview chain

1 domain

e7pnke1(e:7-82)

Chain ECytochrome b559 subunit alphaview chain

1 domain

e7pnkE1(E:7-82)

Chain fCytochrome b559 subunit betaview chain

1 domain

e7pnkf1(f:14-44)

Chain FCytochrome b559 subunit betaview chain

1 domain

e7pnkF1(F:14-44)

Chain GChlorophyll a-b binding protein, chloroplasticview chain

1 domain

e7pnkG1(G:31-251)

Chain hPhotosystem II reaction center protein Hview chain

1 domain

e7pnkh1(h:19-85)

Chain HPhotosystem II reaction center protein Hview chain

1 domain

e7pnkH1(H:19-85)

Chain iPhotosystem II reaction center protein Iview chain

1 domain

e7pnki1(i:1-35)

Chain IPhotosystem II reaction center protein Iview chain

1 domain

e7pnkI1(I:1-35)

Chain jPhotosystem II reaction center protein Jview chain

1 domain

e7pnkj1(j:7-42)

Chain JPhotosystem II reaction center protein Jview chain

1 domain

e7pnkJ1(J:7-42)

Chain kPhotosystem II reaction center protein Kview chain

1 domain

e7pnkk1(k:10-46)

Chain KPhotosystem II reaction center protein Kview chain

1 domain

e7pnkK1(K:10-46)

Chain lPhotosystem II reaction center protein Lview chain

1 domain

e7pnkl1(l:1-38)

Chain LPhotosystem II reaction center protein Lview chain

1 domain

e7pnkL1(L:1-38)

Chain mPhotosystem II reaction center protein Mview chain

1 domain

e7pnkm1(m:3-33)

Chain MPhotosystem II reaction center protein Mview chain

1 domain

e7pnkM1(M:3-33)

Chain NChlorophyll a-b binding protein of LHCII type I, chloroplasticview chain

1 domain

e7pnkN1(N:36-257)

Chain oPsbOview chain

1 domain

e7pnko1(o:62-299)

Chain OPsbOview chain

1 domain

e7pnkO1(O:62-299)

Chain pPsbPview chain

1 domain

e7pnkp1(p:58-244)

Chain PPsbPview chain

1 domain

e7pnkP1(P:58-244)

Chain SCP26view chain

1 domain

e7pnkS1(S:47-289)

Chain tPhotosystem II reaction center protein Tview chain

1 domain

e7pnkt1(t:1-30)

Chain TPhotosystem II reaction center protein Tview chain

1 domain

e7pnkT1(T:1-30)

Chain vPhotosystem II reaction center protein Ycf12view chain

1 domain

e7pnkv1(v:2-33)

Chain VPhotosystem II reaction center protein Ycf12view chain

1 domain

e7pnkV1(V:2-33)

Chain wPsbWview chain

1 domain

e7pnkw1(w:60-103)

Chain WPsbWview chain

1 domain

e7pnkW1(W:60-103)

Chain xPsbXview chain

1 domain

e7pnkx1(x:64-93)

Chain XPsbXview chain

1 domain

e7pnkX1(X:64-93)

Chain YLHCII M1view chain

1 domain

e7pnkY1(Y:39-260)

Chain zPhotosystem II reaction center protein Zview chain

1 domain

e7pnkz1(z:1-61)

Chain ZPhotosystem II reaction center protein Zview chain

1 domain

e7pnkZ1(Z:1-61)

All Domains (44)

#	Chain	Domain ID	Range	Family	Classification
1	a	e7pnka1	a:9-344	Photo_RC	5037 → 5037.1 → 5037.1.1
2	A	e7pnkA1	A:9-344	Photo_RC	5037 → 5037.1 → 5037.1.1
3	b	e7pnkb1	b:2-328,b:445-485	PSII	5075 → 5075.1 → 5075.1.1
4	b	e7pnkb2	b:329-444	PSII	3744 → 3744.1 → 3744.1.1
5	B	e7pnkB1	B:329-444	PSII	3744 → 3744.1 → 3744.1.1
6	B	e7pnkB2	B:2-328,B:445-485	PSII	5075 → 5075.1 → 5075.1.1
7	c	e7pnkc1	c:13-461	PSII	5075 → 5075.1 → 5075.1.1
8	C	e7pnkC1	C:13-461	PSII	5075 → 5075.1 → 5075.1.1
9	d	e7pnkd1	d:5-352	Photo_RC	5037 → 5037.1 → 5037.1.1
10	D	e7pnkD1	D:5-352	Photo_RC	5037 → 5037.1 → 5037.1.1
11	e	e7pnke1	e:7-82	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
12	E	e7pnkE1	E:7-82	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
13	f	e7pnkf1	f:14-44	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
14	F	e7pnkF1	F:14-44	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
15	G	e7pnkG1	G:31-251	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
16	h	e7pnkh1	h:19-85	PsbH	5032 → 5032.1 → 5032.1.1
17	H	e7pnkH1	H:19-85	PsbH	5032 → 5032.1 → 5032.1.1
18	i	e7pnki1	i:1-35	PsbI	5035 → 5035.1 → 5035.1.1
19	I	e7pnkI1	I:1-35	PsbI	5035 → 5035.1 → 5035.1.1
20	j	e7pnkj1	j:7-42	PsbJ	5031 → 5031.1 → 5031.1.1
21	J	e7pnkJ1	J:7-42	PsbJ	5031 → 5031.1 → 5031.1.1
22	k	e7pnkk1	k:10-46	PsbK	5034 → 5034.1 → 5034.1.1
23	K	e7pnkK1	K:10-46	PsbK	5034 → 5034.1 → 5034.1.1
24	l	e7pnkl1	l:1-38	PsbL	5030 → 5030.1 → 5030.1.1
25	L	e7pnkL1	L:1-38	PsbL	5030 → 5030.1 → 5030.1.1
26	m	e7pnkm1	m:3-33	PsbM	5033 → 5033.1 → 5033.1.1
27	M	e7pnkM1	M:3-33	PsbM	5033 → 5033.1 → 5033.1.1
28	N	e7pnkN1	N:36-257	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
29	o	e7pnko1	o:62-299	MSP	5084 → 5084.1 → 5084.1.1
30	O	e7pnkO1	O:62-299	MSP	5084 → 5084.1 → 5084.1.1
31	p	e7pnkp1	p:58-244	PsbP	881 → 881.1 → 881.1.1
32	P	e7pnkP1	P:58-244	PsbP	881 → 881.1 → 881.1.1
33	S	e7pnkS1	S:47-289	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
34	t	e7pnkt1	t:1-30	PsbT	3390 → 3390.1 → 3390.1.1
35	T	e7pnkT1	T:1-30	PsbT	3390 → 3390.1 → 3390.1.1
36	v	e7pnkv1	v:2-33	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
37	V	e7pnkV1	V:2-33	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
38	w	e7pnkw1	w:60-103	PsbW	1084 → 1084.1 → 1084.1.1
39	W	e7pnkW1	W:60-103	PsbW	1084 → 1084.1 → 1084.1.1
40	x	e7pnkx1	x:64-93	PsbX	3493 → 3493.1 → 3493.1.1
41	X	e7pnkX1	X:64-93	PsbX	3493 → 3493.1 → 3493.1.1
42	Y	e7pnkY1	Y:39-260	Chloroa_b-bind	5077 → 5077.1 → 5077.1.1
43	z	e7pnkz1	z:1-61	Ycf9	5044 → 5044.1 → 5044.1.1
44	Z	e7pnkZ1	Z:1-61	Ycf9	5044 → 5044.1 → 5044.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors