ECODEvolutionary Classification of Protein Domains

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PDB 7RBY

X-RAY DIFFRACTION2.82 Å4 chains4 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ASpike protein S1view chain

1 domain

e7rbyA1(A:334-528)

Chain BIlama-isolated nanobody NIH-CoV nb-112 specific to SARS-CoV-2 RBDview chain

1 domain

e7rbyB1(B:1-113)

Chain CSpike protein S1view chain

1 domain

e7rbyC1(C:334-528)

Chain DIlama-isolated nanobody NIH-CoV nb-112 specific to SARS-CoV-2 RBDview chain

1 domain

e7rbyD1(D:1-113)

All Domains (4)

#	Chain	Domain ID	Range	Family	Classification
1	A	e7rbyA1	A:334-528	bCoV_S1_RBD	4169 → 4169.1 → 4169.1.1
2	B	e7rbyB1	B:1-113	V-set	11 → 11.1 → 11.1.1
3	C	e7rbyC1	C:334-528	bCoV_S1_RBD	4169 → 4169.1 → 4169.1.1
4	D	e7rbyD1	D:1-113	V-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors