ECODEvolutionary Classification of Protein Domains

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PDB 7RCV

ELECTRON MICROSCOPY42 chains44 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain aPhotosystem II protein D1 2view chain

1 domain

e7rcva1(a:11-344)

Chain APhotosystem II protein D1 2view chain

1 domain

e7rcvA1(A:11-344)

Chain bPhotosystem II CP47 reaction center proteinview chain

2 domains

e7rcvb1(b:2-328,b:445-504)e7rcvb2(b:329-444)

Chain BPhotosystem II CP47 reaction center proteinview chain

2 domains

e7rcvB1(B:2-328,B:445-504)e7rcvB2(B:329-444)

Chain cPhotosystem II CP43 reaction center proteinview chain

1 domain

e7rcvc1(c:11-460)

Chain CPhotosystem II CP43 reaction center proteinview chain

1 domain

e7rcvC1(C:11-460)

Chain dPhotosystem II D2 proteinview chain

1 domain

e7rcvd1(d:12-352)

Chain DPhotosystem II D2 proteinview chain

1 domain

e7rcvD1(D:12-352)

Chain eCytochrome b559 subunit alphaview chain

1 domain

e7rcve1(e:3-80)

Chain ECytochrome b559 subunit alphaview chain

1 domain

e7rcvE1(E:3-80)

Chain fCytochrome b559 subunit betaview chain

1 domain

e7rcvf1(f:10-44)

Chain FCytochrome b559 subunit betaview chain

1 domain

e7rcvF1(F:10-44)

Chain hPhotosystem II reaction center protein Hview chain

1 domain

e7rcvh1(h:2-64)

Chain HPhotosystem II reaction center protein Hview chain

1 domain

e7rcvH1(H:2-64)

Chain iPhotosystem II reaction center protein Iview chain

1 domain

e7rcvi1(i:1-36)

Chain IPhotosystem II reaction center protein Iview chain

1 domain

e7rcvI1(I:1-36)

Chain jPhotosystem II reaction center protein Jview chain

1 domain

e7rcvj1(j:1-39)

Chain JPhotosystem II reaction center protein Jview chain

1 domain

e7rcvJ1(J:1-39)

Chain kPhotosystem II reaction center protein Kview chain

1 domain

e7rcvk1(k:9-45)

Chain KPhotosystem II reaction center protein Kview chain

1 domain

e7rcvK1(K:9-45)

Chain lPhotosystem II reaction center protein Lview chain

1 domain

e7rcvl1(l:1-39)

Chain LPhotosystem II reaction center protein Lview chain

1 domain

e7rcvL1(L:1-39)

Chain mPhotosystem II reaction center protein Mview chain

1 domain

e7rcvm1(m:1-31)

Chain MPhotosystem II reaction center protein Mview chain

1 domain

e7rcvM1(M:1-31)

Chain oPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e7rcvo1(o:31-273)

Chain OPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e7rcvO1(O:31-273)

Chain qSll1638 proteinview chain

1 domain

e7rcvq1(q:29-147)

Chain QSll1638 proteinview chain

1 domain

e7rcvQ1(Q:29-147)

Chain rPhotosystem II protein Yview chain

1 domain

e7rcvr1(r:2-35)

Chain RPhotosystem II protein Yview chain

1 domain

e7rcvR1(R:2-35)

Chain tPhotosystem II reaction center protein Tview chain

1 domain

e7rcvt1(t:1-30)

Chain TPhotosystem II reaction center protein Tview chain

1 domain

e7rcvT1(T:1-30)

Chain uPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e7rcvu1(u:37-131)

Chain UPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e7rcvU1(U:37-131)

Chain vCytochrome c-550view chain

1 domain

e7rcvv1(v:26-160)

Chain VCytochrome c-550view chain

1 domain

e7rcvV1(V:26-160)

Chain xPhotosystem II reaction center X proteinview chain

1 domain

e7rcvx1(x:1-38)

Chain XPhotosystem II reaction center X proteinview chain

1 domain

e7rcvX1(X:1-38)

Chain yPhotosystem II reaction center protein Ycf12view chain

1 domain

e7rcvy1(y:62-93)

Chain YPhotosystem II reaction center protein Ycf12view chain

1 domain

e7rcvY1(Y:62-93)

Chain zPhotosystem II reaction center protein Zview chain

1 domain

e7rcvz1(z:2-61)

Chain ZPhotosystem II reaction center protein Zview chain

1 domain

e7rcvZ1(Z:2-61)

All Domains (44)

#	Chain	Domain ID	Range	Family	Classification
1	a	e7rcva1	a:11-344	Photo_RC	5037 → 5037.1 → 5037.1.1
2	A	e7rcvA1	A:11-344	Photo_RC	5037 → 5037.1 → 5037.1.1
3	b	e7rcvb1	b:2-328,b:445-504	PSII	5075 → 5075.1 → 5075.1.1
4	b	e7rcvb2	b:329-444	PSII	3744 → 3744.1 → 3744.1.1
5	B	e7rcvB1	B:2-328,B:445-504	PSII	5075 → 5075.1 → 5075.1.1
6	B	e7rcvB2	B:329-444	PSII	3744 → 3744.1 → 3744.1.1
7	c	e7rcvc1	c:11-460	PSII	5075 → 5075.1 → 5075.1.1
8	C	e7rcvC1	C:11-460	PSII	5075 → 5075.1 → 5075.1.1
9	d	e7rcvd1	d:12-352	Photo_RC	5037 → 5037.1 → 5037.1.1
10	D	e7rcvD1	D:12-352	Photo_RC	5037 → 5037.1 → 5037.1.1
11	e	e7rcve1	e:3-80	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
12	E	e7rcvE1	E:3-80	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
13	f	e7rcvf1	f:10-44	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
14	F	e7rcvF1	F:10-44	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
15	h	e7rcvh1	h:2-64	PsbH	5032 → 5032.1 → 5032.1.1
16	H	e7rcvH1	H:2-64	PsbH	5032 → 5032.1 → 5032.1.1
17	i	e7rcvi1	i:1-36	PsbI	5035 → 5035.1 → 5035.1.1
18	I	e7rcvI1	I:1-36	PsbI	5035 → 5035.1 → 5035.1.1
19	j	e7rcvj1	j:1-39	PsbJ	5031 → 5031.1 → 5031.1.1
20	J	e7rcvJ1	J:1-39	PsbJ	5031 → 5031.1 → 5031.1.1
21	k	e7rcvk1	k:9-45	PsbK	5034 → 5034.1 → 5034.1.1
22	K	e7rcvK1	K:9-45	PsbK	5034 → 5034.1 → 5034.1.1
23	l	e7rcvl1	l:1-39	PsbL	5030 → 5030.1 → 5030.1.1
24	L	e7rcvL1	L:1-39	PsbL	5030 → 5030.1 → 5030.1.1
25	m	e7rcvm1	m:1-31	PsbM	5033 → 5033.1 → 5033.1.1
26	M	e7rcvM1	M:1-31	PsbM	5033 → 5033.1 → 5033.1.1
27	o	e7rcvo1	o:31-273	MSP	5084 → 5084.1 → 5084.1.1
28	O	e7rcvO1	O:31-273	MSP	5084 → 5084.1 → 5084.1.1
29	q	e7rcvq1	q:29-147	PsbQ	601 → 601.18 → 601.18.1
30	Q	e7rcvQ1	Q:29-147	PsbQ	601 → 601.18 → 601.18.1
31	r	e7rcvr1	r:2-35	PsbY	6106 → 6106.1 → 6106.1.1
32	R	e7rcvR1	R:2-35	PsbY	6106 → 6106.1 → 6106.1.1
33	t	e7rcvt1	t:1-30	PsbT	3390 → 3390.1 → 3390.1.1
34	T	e7rcvT1	T:1-30	PsbT	3390 → 3390.1 → 3390.1.1
35	u	e7rcvu1	u:37-131	PsbU	102 → 102.1 → 102.1.1
36	U	e7rcvU1	U:37-131	PsbU	102 → 102.1 → 102.1.1
37	v	e7rcvv1	v:26-160	Cytochrom_C550	107 → 107.1 → 107.1.1
38	V	e7rcvV1	V:26-160	Cytochrom_C550	107 → 107.1 → 107.1.1
39	x	e7rcvx1	x:1-38	PsbX	3493 → 3493.1 → 3493.1.1
40	X	e7rcvX1	X:1-38	PsbX	3493 → 3493.1 → 3493.1.1
41	y	e7rcvy1	y:62-93	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
42	Y	e7rcvY1	Y:62-93	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
43	z	e7rcvz1	z:2-61	Ycf9	5044 → 5044.1 → 5044.1.1
44	Z	e7rcvZ1	Z:2-61	Ycf9	5044 → 5044.1 → 5044.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors