ECODEvolutionary Classification of Protein Domains

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PDB 7VPX

ELECTRON MICROSCOPY35 chains37 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 1Splicing factor 3B subunit 1view chain

1 domain

e7vpx11(1:490-1304)

Chain 3Splicing factor 3B subunit 3view chain

4 domains

e7vpx31(3:404-441,3:773-1132)e7vpx32(3:1133-1217)e7vpx33(3:1-403)e7vpx34(3:442-772)

Chain 4Splicing factor 3B subunit 4view chain

2 domains

e7vpx41(4:90-181)e7vpx42(4:11-89)

Chain 5Splicing factor 3B subunit 5view chain

1 domain

e7vpx51(5:16-81)

Chain 6PHD finger-like domain-containing protein 5Aview chain

1 domain

e7vpx61(6:9-89)

Chain aSmall nuclear ribonucleoprotein Sm D2view chain

1 domain

e7vpxa1(a:19-116)

Chain ASplicing factor 3A subunit 1view chain

1 domain

e7vpxA1(A:160-282)

Chain bSmall nuclear ribonucleoprotein Fview chain

1 domain

e7vpxb1(b:2-75)

Chain BSplicing factor 3A subunit 2view chain

2 domains

e7vpxB1(B:41-86)e7vpxB2(B:87-91,B:114-209)

Chain cSmall nuclear ribonucleoprotein Eview chain

1 domain

e7vpxc1(c:14-92)

Chain CSplicing factor 3A subunit 3view chain

1 domain

e7vpxC1(C:2-353)

Chain dSmall nuclear ribonucleoprotein Gview chain

1 domain

e7vpxd1(d:3-76)

Chain DSplicing factor 1view chain

2 domains

e7vpxD1(D:133-180,D:202-229)e7vpxD2(D:46-68,D:96-132)

Chain eSmall nuclear ribonucleoprotein Sm D3view chain

1 domain

e7vpxe1(e:2-84)

Chain EProbable ATP-dependent RNA helicase DDX46view chain

2 domains

e7vpxE1(E:350-571)e7vpxE2(E:572-743)

Chain fSmall nuclear ribonucleoprotein-associated proteins B and B'view chain

1 domain

e7vpxf1(f:4-87)

Chain FU2 small nuclear ribonucleoprotein A'view chain

1 domain

e7vpxF1(F:2-163)

Chain gSmall nuclear ribonucleoprotein Sm D1view chain

1 domain

e7vpxg1(g:1-82)

Chain GU2 small nuclear ribonucleoprotein B''view chain

2 domains

e7vpxG1(G:6-87)e7vpxG2(G:88-99,G:149-225)

Chain hSmall nuclear ribonucleoprotein Sm D1view chain

1 domain

e7vpxh1(h:2-82)

Chain iSmall nuclear ribonucleoprotein Sm D2view chain

1 domain

e7vpxi1(i:11-114)

Chain jSmall nuclear ribonucleoprotein Sm D3view chain

1 domain

e7vpxj1(j:3-83)

Chain kSmall nuclear ribonucleoprotein-associated proteins B and B'view chain

1 domain

e7vpxk1(k:6-91)

Chain lSmall nuclear ribonucleoprotein Eview chain

1 domain

e7vpxl1(l:14-90)

Chain mSmall nuclear ribonucleoprotein Fview chain

1 domain

e7vpxm1(m:2-75)

Chain MU1 small nuclear ribonucleoprotein Aview chain

1 domain

e7vpxM1(M:6-103)

Chain nSmall nuclear ribonucleoprotein Gview chain

1 domain

e7vpxn1(n:4-76)

Chain NU1 small nuclear ribonucleoprotein Cview chain

1 domain

e7vpxN1(N:2-51)

Chain OU1 small nuclear ribonucleoprotein 70 kDaview chain

1 domain

e7vpxO1(O:100-181)

All Domains (37)

#	Chain	Domain ID	Range	Family	Classification
1	1	e7vpx11	1:490-1304	PPP2R1A-like_HEAT	109 → 109.4 → 109.4.1
2	3	e7vpx31	3:404-441,3:773-1132	CPSF_A	5 → 5.1 → 5.1.4
3	3	e7vpx32	3:1133-1217	CPSF_A	101 → 101.1 → 101.1.1
4	3	e7vpx33	3:1-403	MMS1_N	5 → 5.1 → 5.1.4
5	3	e7vpx34	3:442-772	Beta-prop_RSE1_2nd	5 → 5.1 → 5.1.4
6	4	e7vpx41	4:90-181	RRM_1	304 → 304.9 → 304.9.1
7	4	e7vpx42	4:11-89	RRM_1	304 → 304.9 → 304.9.1
8	5	e7vpx51	5:16-81	SF3b10	1106 → 1106.1 → 1106.1.1
9	6	e7vpx61	6:9-89	PHF5	377 → 377.1 → 377.1.4
10	a	e7vpxa1	a:19-116	LSM	4 → 4.1 → 4.1.1
11	A	e7vpxA1	A:160-282	Surp	574 → 574.1 → 574.1.1
12	b	e7vpxb1	b:2-75	LSM	4 → 4.1 → 4.1.1
13	B	e7vpxB1	B:41-86	zf-met	386 → 386.1 → 386.1.1
14	B	e7vpxB2	B:87-91,B:114-209	SF3A2	319 → 319.2 → 319.2.1
15	c	e7vpxc1	c:14-92	LSM	4 → 4.1 → 4.1.1
16	C	e7vpxC1	C:2-353	130.1.1.0	130 → 130.1 → 130.1.1
17	d	e7vpxd1	d:3-76	LSM	4 → 4.1 → 4.1.1
18	D	e7vpxD1	D:133-180,D:202-229	KH_1_3	327 → 327.11 → 327.11.2
19	D	e7vpxD2	D:46-68,D:96-132	SF1-HH	3568 → 3568.1 → 3568.1.1
20	e	e7vpxe1	e:2-84	LSM	4 → 4.1 → 4.1.1
21	E	e7vpxE1	E:350-571	DEAD	2004 → 2004.1 → 2004.1.1
22	E	e7vpxE2	E:572-743	Helicase_C	2004 → 2004.1 → 2004.1.1
23	f	e7vpxf1	f:4-87	LSM	4 → 4.1 → 4.1.1
24	F	e7vpxF1	F:2-163	LRR_9	207 → 207.1 → 207.1.1
25	g	e7vpxg1	g:1-82	LSM	4 → 4.1 → 4.1.1
26	G	e7vpxG1	G:6-87	RRM_1	304 → 304.9 → 304.9.1
27	G	e7vpxG2	G:88-99,G:149-225	RRM_1	304 → 304.9 → 304.9.1
28	h	e7vpxh1	h:2-82	LSM	4 → 4.1 → 4.1.1
29	i	e7vpxi1	i:11-114	LSM	4 → 4.1 → 4.1.1
30	j	e7vpxj1	j:3-83	LSM	4 → 4.1 → 4.1.1
31	k	e7vpxk1	k:6-91	LSM	4 → 4.1 → 4.1.1
32	l	e7vpxl1	l:14-90	LSM	4 → 4.1 → 4.1.1
33	m	e7vpxm1	m:2-75	LSM	4 → 4.1 → 4.1.1
34	M	e7vpxM1	M:6-103	RRM_1	304 → 304.9 → 304.9.1
35	n	e7vpxn1	n:4-76	LSM	4 → 4.1 → 4.1.1
36	N	e7vpxN1	N:2-51	zf-U1	386 → 386.1 → 386.1.1
37	O	e7vpxO1	O:100-181	RRM_1	304 → 304.9 → 304.9.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors