ECODEvolutionary Classification of Protein Domains

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PDB 7XMB

X-RAY DIFFRACTION2.20 Å26 chains28 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ACytochrome c oxidase subunit 1view chain

1 domain

e7xmbA1(A:1-514)

Chain BCYTOCHROME C OXIDASEview chain

2 domains

e7xmbB1(B:1-90)e7xmbB2(B:91-227)

Chain CCytochrome c oxidase subunit 3view chain

1 domain

e7xmbC1(C:3-261)

Chain DCytochrome c oxidase subunit 4 isoform 1view chain

1 domain

e7xmbD1(D:4-147)

Chain ECytochrome c oxidase subunit 5Aview chain

1 domain

e7xmbE1(E:5-109)

Chain FCytochrome c oxidase subunit 5B, mitochondrialview chain

1 domain

e7xmbF1(F:3-95)

Chain GCytochrome c oxidase subunit 6A2, mitochondrialview chain

1 domain

e7xmbG1(G:3-84)

Chain HCytochrome c oxidase subunit 6B1view chain

1 domain

e7xmbH1(H:7-85)

Chain ICytochrome c oxidase subunit 6Cview chain

1 domain

e7xmbI1(I:2-73)

Chain JCytochrome c oxidase subunit 7A1view chain

1 domain

e7xmbJ1(J:1-57)

Chain KCytochrome c oxidase subunit 7Bview chain

1 domain

e7xmbK1(K:6-56)

Chain LCytochrome c oxidase subunit 7C, mitochondrialview chain

1 domain

e7xmbL1(L:2-47)

Chain MCytochrome c oxidase subunit 8Bview chain

1 domain

e7xmbM1(M:1-43)

Chain NCytochrome c oxidase subunit 1view chain

1 domain

e7xmbN1(N:1-514)

Chain OCYTOCHROME C OXIDASEview chain

2 domains

e7xmbO1(O:1-90)e7xmbO2(O:91-227)

Chain PCytochrome c oxidase subunit 3view chain

1 domain

e7xmbP1(P:3-261)

Chain QCytochrome c oxidase subunit 4 isoform 1view chain

1 domain

e7xmbQ1(Q:9-147)

Chain RCytochrome c oxidase subunit 5Aview chain

1 domain

e7xmbR1(R:5-109)

Chain SCytochrome c oxidase subunit 5B, mitochondrialview chain

1 domain

e7xmbS1(S:2-97)

Chain TCytochrome c oxidase subunit 6A2, mitochondrialview chain

1 domain

e7xmbT1(T:3-84)

Chain UCytochrome c oxidase subunit 6B1view chain

1 domain

e7xmbU1(U:7-85)

Chain VCytochrome c oxidase subunit 6Cview chain

1 domain

e7xmbV1(V:2-73)

Chain WCytochrome c oxidase subunit 7A1view chain

1 domain

e7xmbW1(W:1-57)

Chain XCytochrome c oxidase subunit 7Bview chain

1 domain

e7xmbX1(X:6-54)

Chain YCytochrome c oxidase subunit 7C, mitochondrialview chain

1 domain

e7xmbY1(Y:2-46)

Chain ZCytochrome c oxidase subunit 8Bview chain

1 domain

e7xmbZ1(Z:1-41)

All Domains (28)

#	Chain	Domain ID	Range	Family	Classification
1	A	e7xmbA1	A:1-514	COX1	5038 → 5038.1 → 5038.1.1
2	B	e7xmbB1	B:1-90	COX2_TM	5040 → 5040.1 → 5040.1.1
3	B	e7xmbB2	B:91-227	COX2	3156 → 3156.1 → 3156.1.1
4	C	e7xmbC1	C:3-261	COX3	5039 → 5039.1 → 5039.1.1
5	D	e7xmbD1	D:4-147	COX4	5003 → 5003.1 → 5003.1.1
6	E	e7xmbE1	E:5-109	COX5A	109 → 109.7 → 109.7.1
7	F	e7xmbF1	F:3-95	COX5B	375 → 375.1 → 375.1.8
8	G	e7xmbG1	G:3-84	COX6A	5004 → 5004.1 → 5004.1.1
9	H	e7xmbH1	H:7-85	COX6B	540 → 540.1 → 540.1.1
10	I	e7xmbI1	I:2-73	COX6C	5005 → 5005.1 → 5005.1.1
11	J	e7xmbJ1	J:1-57	COX7a	5006 → 5006.1 → 5006.1.1
12	K	e7xmbK1	K:6-56	COX7B	5007 → 5007.1 → 5007.1.1
13	L	e7xmbL1	L:2-47	COX7C	5008 → 5008.1 → 5008.1.1
14	M	e7xmbM1	M:1-43	COX8	5009 → 5009.1 → 5009.1.1
15	N	e7xmbN1	N:1-514	COX1	5038 → 5038.1 → 5038.1.1
16	O	e7xmbO1	O:1-90	COX2_TM	5040 → 5040.1 → 5040.1.1
17	O	e7xmbO2	O:91-227	COX2	3156 → 3156.1 → 3156.1.1
18	P	e7xmbP1	P:3-261	COX3	5039 → 5039.1 → 5039.1.1
19	Q	e7xmbQ1	Q:9-147	COX4	5003 → 5003.1 → 5003.1.1
20	R	e7xmbR1	R:5-109	COX5A	109 → 109.7 → 109.7.1
21	S	e7xmbS1	S:2-97	COX5B	375 → 375.1 → 375.1.8
22	T	e7xmbT1	T:3-84	COX6A	5004 → 5004.1 → 5004.1.1
23	U	e7xmbU1	U:7-85	COX6B	540 → 540.1 → 540.1.1
24	V	e7xmbV1	V:2-73	COX6C	5005 → 5005.1 → 5005.1.1
25	W	e7xmbW1	W:1-57	COX7a	5006 → 5006.1 → 5006.1.1
26	X	e7xmbX1	X:6-54	COX7B	5007 → 5007.1 → 5007.1.1
27	Y	e7xmbY1	Y:2-46	COX7C	5008 → 5008.1 → 5008.1.1
28	Z	e7xmbZ1	Z:1-41	COX8	5009 → 5009.1 → 5009.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors