ECODEvolutionary Classification of Protein Domains

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PDB 7YCK

X-RAY DIFFRACTION2.60 Å6 chains8 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ASpike protein S1view chain

1 domain

e7yckA1(A:333-530)

Chain BSpike protein S1view chain

1 domain

e7yckB1(B:333-531)

Chain CFP-12A Fab heavy chainview chain

2 domains

e7yckC1(C:1-113)e7yckC2(C:114-213)

Chain DFP-12A Fab light chainview chain

2 domains

e7yckD1(D:108-209)e7yckD2(D:2-107)

Chain EFP-12A Fab heavy chainview chain

1 domain

e7yckE1(E:1-112)

Chain FFP-12A Fab light chainview chain

1 domain

e7yckF1(F:2-106)

All Domains (8)

#	Chain	Domain ID	Range	Family	Classification
1	A	e7yckA1	A:333-530	bCoV_S1_RBD	4169 → 4169.1 → 4169.1.1
2	B	e7yckB1	B:333-531	bCoV_S1_RBD	4169 → 4169.1 → 4169.1.1
3	C	e7yckC1	C:1-113	V-set	11 → 11.1 → 11.1.1
4	C	e7yckC2	C:114-213	C1-set	11 → 11.1 → 11.1.1
5	D	e7yckD1	D:108-209	C1-set	11 → 11.1 → 11.1.1
6	D	e7yckD2	D:2-107	V-set	11 → 11.1 → 11.1.1
7	E	e7yckE1	E:1-112	V-set	11 → 11.1 → 11.1.1
8	F	e7yckF1	F:2-106	V-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors