ECODEvolutionary Classification of Protein Domains

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PDB 7YQ2

X-RAY DIFFRACTION1.90 Å39 chains41 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain aPhotosystem II protein D1 2view chain

1 domain

e7yq2a1(a:9-344)

Chain APhotosystem II protein D1 2view chain

1 domain

e7yq2A1(A:11-344)

Chain bPhotosystem II CP47 reaction center proteinview chain

2 domains

e7yq2b1(b:329-444)e7yq2b2(b:2-328,b:445-505)

Chain BPhotosystem II CP47 reaction center proteinview chain

2 domains

e7yq2B1(B:329-444)e7yq2B2(B:2-328,B:445-506)

Chain cPhotosystem II CP43 reaction center proteinview chain

1 domain

e7yq2c1(c:18-473)

Chain CPhotosystem II CP43 reaction center proteinview chain

1 domain

e7yq2C1(C:23-473)

Chain dPhotosystem II D2 proteinview chain

1 domain

e7yq2d1(d:11-352)

Chain DPhotosystem II D2 proteinview chain

1 domain

e7yq2D1(D:11-352)

Chain eCytochrome b559 subunit alphaview chain

1 domain

e7yq2e1(e:6-84)

Chain ECytochrome b559 subunit alphaview chain

1 domain

e7yq2E1(E:3-82)

Chain fCytochrome b559 subunit betaview chain

1 domain

e7yq2f1(f:14-45)

Chain FCytochrome b559 subunit betaview chain

1 domain

e7yq2F1(F:12-45)

Chain hPhotosystem II reaction center protein Hview chain

1 domain

e7yq2h1(h:2-66)

Chain HPhotosystem II reaction center protein Hview chain

1 domain

e7yq2H1(H:2-66)

Chain iPhotosystem II reaction center protein Iview chain

1 domain

e7yq2i1(i:1-37)

Chain IPhotosystem II reaction center protein Iview chain

1 domain

e7yq2I1(I:1-37)

Chain jPhotosystem II reaction center protein Jview chain

1 domain

e7yq2j1(j:2-40)

Chain JPhotosystem II reaction center protein Jview chain

1 domain

e7yq2J1(J:5-40)

Chain kPhotosystem II reaction center protein Kview chain

1 domain

e7yq2k1(k:10-46)

Chain KPhotosystem II reaction center protein Kview chain

1 domain

e7yq2K1(K:10-46)

Chain lPhotosystem II reaction center protein Lview chain

1 domain

e7yq2l1(l:1-37)

Chain LPhotosystem II reaction center protein Lview chain

1 domain

e7yq2L1(L:1-37)

Chain mPhotosystem II reaction center protein Mview chain

1 domain

e7yq2m1(m:1-34)

Chain MPhotosystem II reaction center protein Mview chain

1 domain

e7yq2M1(M:1-34)

Chain oPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e7yq2o1(o:4-246)

Chain OPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e7yq2O1(O:4-246)

Chain RPhotosystem II protein Yview chain

1 domain

e7yq2R1(R:2-35)

Chain tPhotosystem II reaction center protein Tview chain

1 domain

e7yq2t1(t:1-30)

Chain TPhotosystem II reaction center protein Tview chain

1 domain

e7yq2T1(T:1-30)

Chain uPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e7yq2u1(u:8-104)

Chain UPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e7yq2U1(U:7-104)

Chain vCytochrome c-550view chain

1 domain

e7yq2v1(v:1-137)

Chain VCytochrome c-550view chain

1 domain

e7yq2V1(V:1-137)

Chain xPhotosystem II reaction center X proteinview chain

1 domain

e7yq2x1(x:2-40)

Chain XPhotosystem II reaction center X proteinview chain

1 domain

e7yq2X1(X:2-41)

Chain yPhotosystem II reaction center protein Ycf12view chain

1 domain

e7yq2y1(y:17-46)

Chain YPhotosystem II reaction center protein Ycf12view chain

1 domain

e7yq2Y1(Y:17-46)

Chain zPhotosystem II reaction center protein Zview chain

1 domain

e7yq2z1(z:1-62)

Chain ZPhotosystem II reaction center protein Zview chain

1 domain

e7yq2Z1(Z:1-62)

All Domains (41)

#	Chain	Domain ID	Range	Family	Classification
1	a	e7yq2a1	a:9-344	Photo_RC	5037 → 5037.1 → 5037.1.1
2	A	e7yq2A1	A:11-344	Photo_RC	5037 → 5037.1 → 5037.1.1
3	b	e7yq2b1	b:329-444	PSII	3744 → 3744.1 → 3744.1.1
4	b	e7yq2b2	b:2-328,b:445-505	PSII	5075 → 5075.1 → 5075.1.1
5	B	e7yq2B1	B:329-444	PSII	3744 → 3744.1 → 3744.1.1
6	B	e7yq2B2	B:2-328,B:445-506	PSII	5075 → 5075.1 → 5075.1.1
7	c	e7yq2c1	c:18-473	PSII	5075 → 5075.1 → 5075.1.1
8	C	e7yq2C1	C:23-473	PSII	5075 → 5075.1 → 5075.1.1
9	d	e7yq2d1	d:11-352	Photo_RC	5037 → 5037.1 → 5037.1.1
10	D	e7yq2D1	D:11-352	Photo_RC	5037 → 5037.1 → 5037.1.1
11	e	e7yq2e1	e:6-84	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
12	E	e7yq2E1	E:3-82	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
13	f	e7yq2f1	f:14-45	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
14	F	e7yq2F1	F:12-45	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
15	h	e7yq2h1	h:2-66	PsbH	5032 → 5032.1 → 5032.1.1
16	H	e7yq2H1	H:2-66	PsbH	5032 → 5032.1 → 5032.1.1
17	i	e7yq2i1	i:1-37	PsbI	5035 → 5035.1 → 5035.1.1
18	I	e7yq2I1	I:1-37	PsbI	5035 → 5035.1 → 5035.1.1
19	j	e7yq2j1	j:2-40	PsbJ	5031 → 5031.1 → 5031.1.1
20	J	e7yq2J1	J:5-40	PsbJ	5031 → 5031.1 → 5031.1.1
21	k	e7yq2k1	k:10-46	PsbK	5034 → 5034.1 → 5034.1.1
22	K	e7yq2K1	K:10-46	PsbK	5034 → 5034.1 → 5034.1.1
23	l	e7yq2l1	l:1-37	PsbL	5030 → 5030.1 → 5030.1.1
24	L	e7yq2L1	L:1-37	PsbL	5030 → 5030.1 → 5030.1.1
25	m	e7yq2m1	m:1-34	PsbM	5033 → 5033.1 → 5033.1.1
26	M	e7yq2M1	M:1-34	PsbM	5033 → 5033.1 → 5033.1.1
27	o	e7yq2o1	o:4-246	MSP	5084 → 5084.1 → 5084.1.1
28	O	e7yq2O1	O:4-246	MSP	5084 → 5084.1 → 5084.1.1
29	R	e7yq2R1	R:2-35	PsbY	6106 → 6106.1 → 6106.1.1
30	t	e7yq2t1	t:1-30	PsbT	3390 → 3390.1 → 3390.1.1
31	T	e7yq2T1	T:1-30	PsbT	3390 → 3390.1 → 3390.1.1
32	u	e7yq2u1	u:8-104	PsbU	102 → 102.1 → 102.1.1
33	U	e7yq2U1	U:7-104	PsbU	102 → 102.1 → 102.1.1
34	v	e7yq2v1	v:1-137	Cytochrom_C550	107 → 107.1 → 107.1.1
35	V	e7yq2V1	V:1-137	Cytochrom_C550	107 → 107.1 → 107.1.1
36	x	e7yq2x1	x:2-40	PsbX	3493 → 3493.1 → 3493.1.1
37	X	e7yq2X1	X:2-41	PsbX	3493 → 3493.1 → 3493.1.1
38	y	e7yq2y1	y:17-46	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
39	Y	e7yq2Y1	Y:17-46	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
40	z	e7yq2z1	z:1-62	Ycf9	5044 → 5044.1 → 5044.1.1
41	Z	e7yq2Z1	Z:1-62	Ycf9	5044 → 5044.1 → 5044.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors