ECODEvolutionary Classification of Protein Domains

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PDB 8CB2

X-RAY DIFFRACTION2.70 Å4 chains4 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AAACag pathogenicity island proteinview chain

1 domain

e8cb2AAA01(AAA:38-140)

Chain BBBType IV secretion system apparatus protein CagY (Fragment)view chain

1 domain

e8cb2BBB01(BBB:1-148,BBB:188-228)

Chain CCCCag pathogenicity island proteinview chain

1 domain

e8cb2CCC1(CCC:38-140)

Chain DDDType IV secretion system apparatus protein CagY (Fragment)view chain

1 domain

e8cb2DDD1(DDD:1-148,DDD:188-228)

All Domains (4)

#	Chain	Domain ID	Range	Family	Classification
1	AAA	e8cb2AAA01	AAA:38-140	CagX	11 → 11.1 → 11.1.1
2	BBB	e8cb2BBB01	BBB:1-148,BBB:188-228	TrbI	517 → 517.2 → 517.2.1
3	CCC	e8cb2CCC1	CCC:38-140	CagX	11 → 11.1 → 11.1.1
4	DDD	e8cb2DDD1	DDD:1-148,DDD:188-228	TrbI	517 → 517.2 → 517.2.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors