ECODEvolutionary Classification of Protein Domains

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PDB 8EQM

ELECTRON MICROSCOPY32 chains34 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain aPhotosystem II protein D1view chain

1 domain

e8eqma1(a:13-345)

Chain APhotosystem II protein D1view chain

1 domain

e8eqmA1(A:13-345)

Chain bPhotosystem II CP47 reaction center proteinview chain

2 domains

e8eqmb1(b:329-444)e8eqmb2(b:2-328,b:445-484)

Chain BPhotosystem II CP47 reaction center proteinview chain

2 domains

e8eqmB1(B:329-444)e8eqmB2(B:2-328,B:445-484)

Chain cPhotosystem II CP43 reaction center proteinview chain

1 domain

e8eqmc1(c:28-480)

Chain CPhotosystem II CP43 reaction center proteinview chain

1 domain

e8eqmC1(C:28-480)

Chain dPhotosystem II D2 proteinview chain

1 domain

e8eqmd1(d:14-351)

Chain DPhotosystem II D2 proteinview chain

1 domain

e8eqmD1(D:14-351)

Chain eCytochrome b559 subunit alphaview chain

1 domain

e8eqme1(e:20-72)

Chain ECytochrome b559 subunit alphaview chain

1 domain

e8eqmE1(E:20-72)

Chain fCytochrome b559 subunit betaview chain

1 domain

e8eqmf1(f:15-44)

Chain FCytochrome b559 subunit betaview chain

1 domain

e8eqmF1(F:15-44)

Chain hPhotosystem II reaction center protein Hview chain

1 domain

e8eqmh1(h:2-66)

Chain HPhotosystem II reaction center protein Hview chain

1 domain

e8eqmH1(H:2-66)

Chain iPhotosystem II reaction center protein Iview chain

1 domain

e8eqmi1(i:1-34)

Chain IPhotosystem II reaction center protein Iview chain

1 domain

e8eqmI1(I:1-34)

Chain kPhotosystem II reaction center protein Kview chain

1 domain

e8eqmk1(k:9-45)

Chain KPhotosystem II reaction center protein Kview chain

1 domain

e8eqmK1(K:9-45)

Chain lPhotosystem II reaction center protein Lview chain

1 domain

e8eqml1(l:11-40)

Chain LPhotosystem II reaction center protein Lview chain

1 domain

e8eqmL1(L:11-40)

Chain mPhotosystem II reaction center protein Mview chain

1 domain

e8eqmm1(m:1-31)

Chain MPhotosystem II reaction center protein Mview chain

1 domain

e8eqmM1(M:1-31)

Chain oPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e8eqmo1(o:28-38,o:61-270)

Chain OPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e8eqmO1(O:28-38,O:61-270)

Chain tPhotosystem II reaction center protein Tview chain

1 domain

e8eqmt1(t:1-30)

Chain TPhotosystem II reaction center protein Tview chain

1 domain

e8eqmT1(T:1-30)

Chain uPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e8eqmu1(u:81-159)

Chain UPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e8eqmU1(U:81-159)

Chain vCytochrome c-550view chain

1 domain

e8eqmv1(v:39-169)

Chain VCytochrome c-550view chain

1 domain

e8eqmV1(V:39-169)

Chain xPhotosystem II reaction center X proteinview chain

1 domain

e8eqmx1(x:1-35)

Chain XPhotosystem II reaction center X proteinview chain

1 domain

e8eqmX1(X:1-35)

All Domains (34)

#	Chain	Domain ID	Range	Family	Classification
1	a	e8eqma1	a:13-345	Photo_RC	5037 → 5037.1 → 5037.1.1
2	A	e8eqmA1	A:13-345	Photo_RC	5037 → 5037.1 → 5037.1.1
3	b	e8eqmb1	b:329-444	PSII	3744 → 3744.1 → 3744.1.1
4	b	e8eqmb2	b:2-328,b:445-484	PSII	5075 → 5075.1 → 5075.1.1
5	B	e8eqmB1	B:329-444	PSII	3744 → 3744.1 → 3744.1.1
6	B	e8eqmB2	B:2-328,B:445-484	PSII	5075 → 5075.1 → 5075.1.1
7	c	e8eqmc1	c:28-480	PSII	5075 → 5075.1 → 5075.1.1
8	C	e8eqmC1	C:28-480	PSII	5075 → 5075.1 → 5075.1.1
9	d	e8eqmd1	d:14-351	Photo_RC	5037 → 5037.1 → 5037.1.1
10	D	e8eqmD1	D:14-351	Photo_RC	5037 → 5037.1 → 5037.1.1
11	e	e8eqme1	e:20-72	Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
12	E	e8eqmE1	E:20-72	Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
13	f	e8eqmf1	f:15-44	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
14	F	e8eqmF1	F:15-44	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
15	h	e8eqmh1	h:2-66	PsbH	5032 → 5032.1 → 5032.1.1
16	H	e8eqmH1	H:2-66	PsbH	5032 → 5032.1 → 5032.1.1
17	i	e8eqmi1	i:1-34	PsbI	5035 → 5035.1 → 5035.1.1
18	I	e8eqmI1	I:1-34	PsbI	5035 → 5035.1 → 5035.1.1
19	k	e8eqmk1	k:9-45	PsbK	5034 → 5034.1 → 5034.1.1
20	K	e8eqmK1	K:9-45	PsbK	5034 → 5034.1 → 5034.1.1
21	l	e8eqml1	l:11-40	PsbL	5030 → 5030.1 → 5030.1.1
22	L	e8eqmL1	L:11-40	PsbL	5030 → 5030.1 → 5030.1.1
23	m	e8eqmm1	m:1-31	PsbM	5033 → 5033.1 → 5033.1.1
24	M	e8eqmM1	M:1-31	PsbM	5033 → 5033.1 → 5033.1.1
25	o	e8eqmo1	o:28-38,o:61-270	MSP	5084 → 5084.1 → 5084.1.1
26	O	e8eqmO1	O:28-38,O:61-270	MSP	5084 → 5084.1 → 5084.1.1
27	t	e8eqmt1	t:1-30	PsbT	3390 → 3390.1 → 3390.1.1
28	T	e8eqmT1	T:1-30	PsbT	3390 → 3390.1 → 3390.1.1
29	u	e8eqmu1	u:81-159	PsbU	102 → 102.1 → 102.1.1
30	U	e8eqmU1	U:81-159	PsbU	102 → 102.1 → 102.1.1
31	v	e8eqmv1	v:39-169	Cytochrom_C550	107 → 107.1 → 107.1.1
32	V	e8eqmV1	V:39-169	Cytochrom_C550	107 → 107.1 → 107.1.1
33	x	e8eqmx1	x:1-35	PsbX	3493 → 3493.1 → 3493.1.1
34	X	e8eqmX1	X:1-35	PsbX	3493 → 3493.1 → 3493.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors