ECODEvolutionary Classification of Protein Domains

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PDB 8F4F

X-RAY DIFFRACTION2.03 Å40 chains42 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain aPhotosystem II protein D1 1view chain

1 domain

e8f4fa1(a:11-344)

Chain APhotosystem II protein D1 1view chain

1 domain

e8f4fA1(A:11-344)

Chain bPhotosystem II CP47 reaction center proteinview chain

2 domains

e8f4fb1(b:2-328,b:445-506)e8f4fb2(b:329-444)

Chain BPhotosystem II CP47 reaction center proteinview chain

2 domains

e8f4fB1(B:329-444)e8f4fB2(B:2-328,B:445-506)

Chain cPhotosystem II CP43 reaction center proteinview chain

1 domain

e8f4fc1(c:23-473)

Chain CPhotosystem II CP43 reaction center proteinview chain

1 domain

e8f4fC1(C:32-473)

Chain dPhotosystem II D2 proteinview chain

1 domain

e8f4fd1(d:12-352)

Chain DPhotosystem II D2 proteinview chain

1 domain

e8f4fD1(D:12-352)

Chain eCytochrome b559 subunit alphaview chain

1 domain

e8f4fe1(e:3-84)

Chain ECytochrome b559 subunit alphaview chain

1 domain

e8f4fE1(E:3-84)

Chain fCytochrome b559 subunit betaview chain

1 domain

e8f4ff1(f:12-45)

Chain FCytochrome b559 subunit betaview chain

1 domain

e8f4fF1(F:12-45)

Chain hPhotosystem II reaction center protein Hview chain

1 domain

e8f4fh1(h:2-64)

Chain HPhotosystem II reaction center protein Hview chain

1 domain

e8f4fH1(H:2-66)

Chain iPhotosystem II reaction center protein Iview chain

1 domain

e8f4fi1(i:1-36)

Chain IPhotosystem II reaction center protein Iview chain

1 domain

e8f4fI1(I:1-36)

Chain jPhotosystem II reaction center protein Jview chain

1 domain

e8f4fj1(j:5-40)

Chain JPhotosystem II reaction center protein Jview chain

1 domain

e8f4fJ1(J:5-40)

Chain kPhotosystem II reaction center protein Kview chain

1 domain

e8f4fk1(k:10-46)

Chain KPhotosystem II reaction center protein Kview chain

1 domain

e8f4fK1(K:10-46)

Chain lPhotosystem II reaction center protein Lview chain

1 domain

e8f4fl1(l:2-37)

Chain LPhotosystem II reaction center protein Lview chain

1 domain

e8f4fL1(L:1-37)

Chain mPhotosystem II reaction center protein Mview chain

1 domain

e8f4fm1(m:1-32)

Chain MPhotosystem II reaction center protein Mview chain

1 domain

e8f4fM1(M:1-33)

Chain oPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e8f4fo1(o:3-246)

Chain OPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e8f4fO1(O:3-246)

Chain rPhotosystem II protein Yview chain

1 domain

e8f4fr1(r:2-32)

Chain RPhotosystem II protein Yview chain

1 domain

e8f4fR1(R:2-35)

Chain tPhotosystem II reaction center protein Tview chain

1 domain

e8f4ft1(t:1-30)

Chain TPhotosystem II reaction center protein Tview chain

1 domain

e8f4fT1(T:1-30)

Chain uPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e8f4fu1(u:8-104)

Chain UPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e8f4fU1(U:8-104)

Chain vCytochrome c-550view chain

1 domain

e8f4fv1(v:1-137)

Chain VCytochrome c-550view chain

1 domain

e8f4fV1(V:1-137)

Chain xPhotosystem II reaction center X proteinview chain

1 domain

e8f4fx1(x:2-40)

Chain XPhotosystem II reaction center X proteinview chain

1 domain

e8f4fX1(X:2-39)

Chain yPhotosystem II reaction center protein Ycf12view chain

1 domain

e8f4fy1(y:17-46)

Chain YPhotosystem II reaction center protein Ycf12view chain

1 domain

e8f4fY1(Y:20-46)

Chain zPhotosystem II reaction center protein Zview chain

1 domain

e8f4fz1(z:1-62)

Chain ZPhotosystem II reaction center protein Zview chain

1 domain

e8f4fZ1(Z:1-62)

All Domains (42)

#	Chain	Domain ID	Range	Family	Classification
1	a	e8f4fa1	a:11-344	Photo_RC	5037 → 5037.1 → 5037.1.1
2	A	e8f4fA1	A:11-344	Photo_RC	5037 → 5037.1 → 5037.1.1
3	b	e8f4fb1	b:2-328,b:445-506	PSII	5075 → 5075.1 → 5075.1.1
4	b	e8f4fb2	b:329-444	PSII	3744 → 3744.1 → 3744.1.1
5	B	e8f4fB1	B:329-444	PSII	3744 → 3744.1 → 3744.1.1
6	B	e8f4fB2	B:2-328,B:445-506	PSII	5075 → 5075.1 → 5075.1.1
7	c	e8f4fc1	c:23-473	PSII	5075 → 5075.1 → 5075.1.1
8	C	e8f4fC1	C:32-473	PSII	5075 → 5075.1 → 5075.1.1
9	d	e8f4fd1	d:12-352	Photo_RC	5037 → 5037.1 → 5037.1.1
10	D	e8f4fD1	D:12-352	Photo_RC	5037 → 5037.1 → 5037.1.1
11	e	e8f4fe1	e:3-84	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
12	E	e8f4fE1	E:3-84	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
13	f	e8f4ff1	f:12-45	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
14	F	e8f4fF1	F:12-45	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
15	h	e8f4fh1	h:2-64	PsbH	5032 → 5032.1 → 5032.1.1
16	H	e8f4fH1	H:2-66	PsbH	5032 → 5032.1 → 5032.1.1
17	i	e8f4fi1	i:1-36	PsbI	5035 → 5035.1 → 5035.1.1
18	I	e8f4fI1	I:1-36	PsbI	5035 → 5035.1 → 5035.1.1
19	j	e8f4fj1	j:5-40	PsbJ	5031 → 5031.1 → 5031.1.1
20	J	e8f4fJ1	J:5-40	PsbJ	5031 → 5031.1 → 5031.1.1
21	k	e8f4fk1	k:10-46	PsbK	5034 → 5034.1 → 5034.1.1
22	K	e8f4fK1	K:10-46	PsbK	5034 → 5034.1 → 5034.1.1
23	l	e8f4fl1	l:2-37	PsbL	5030 → 5030.1 → 5030.1.1
24	L	e8f4fL1	L:1-37	PsbL	5030 → 5030.1 → 5030.1.1
25	m	e8f4fm1	m:1-32	PsbM	5033 → 5033.1 → 5033.1.1
26	M	e8f4fM1	M:1-33	PsbM	5033 → 5033.1 → 5033.1.1
27	o	e8f4fo1	o:3-246	MSP	5084 → 5084.1 → 5084.1.1
28	O	e8f4fO1	O:3-246	MSP	5084 → 5084.1 → 5084.1.1
29	r	e8f4fr1	r:2-32	PsbY	6106 → 6106.1 → 6106.1.1
30	R	e8f4fR1	R:2-35	PsbY	6106 → 6106.1 → 6106.1.1
31	t	e8f4ft1	t:1-30	PsbT	3390 → 3390.1 → 3390.1.1
32	T	e8f4fT1	T:1-30	PsbT	3390 → 3390.1 → 3390.1.1
33	u	e8f4fu1	u:8-104	PsbU	102 → 102.1 → 102.1.1
34	U	e8f4fU1	U:8-104	PsbU	102 → 102.1 → 102.1.1
35	v	e8f4fv1	v:1-137	Cytochrom_C550	107 → 107.1 → 107.1.1
36	V	e8f4fV1	V:1-137	Cytochrom_C550	107 → 107.1 → 107.1.1
37	x	e8f4fx1	x:2-40	PsbX	3493 → 3493.1 → 3493.1.1
38	X	e8f4fX1	X:2-39	PsbX	3493 → 3493.1 → 3493.1.1
39	y	e8f4fy1	y:17-46	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
40	Y	e8f4fY1	Y:20-46	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
41	z	e8f4fz1	z:1-62	Ycf9	5044 → 5044.1 → 5044.1.1
42	Z	e8f4fZ1	Z:1-62	Ycf9	5044 → 5044.1 → 5044.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors