ECODEvolutionary Classification of Protein Domains

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PDB 8GOM

X-RAY DIFFRACTION2.78 Å5 chains7 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AMHC class I antigenview chain

2 domains

e8gomA1(A:1-181)e8gomA2(A:182-275)

Chain BBeta-2-microglobulinview chain

1 domain

e8gomB1(B:0-99)

Chain DSARS-CoV-2 specific private TCR RLQ7 alphaview chain

2 domains

e8gomD1(D:1-113)e8gomD2(D:114-193)

Chain ESARS-CoV-2 specific private TCR RLQ7 betaview chain

2 domains

e8gomE1(E:2-119)e8gomE2(E:120-245)

All Domains (7)

#	Chain	Domain ID	Range	Family	Classification
1	A	e8gomA1	A:1-181	MHC_I	233 → 233.1 → 233.1.1
2	A	e8gomA2	A:182-275	C1-set	11 → 11.1 → 11.1.1
3	B	e8gomB1	B:0-99	C1-set	11 → 11.1 → 11.1.1
4	D	e8gomD1	D:1-113	V-set	11 → 11.1 → 11.1.1
5	D	e8gomD2	D:114-193	DUF1968	11 → 11.1 → 11.1.1
6	E	e8gomE1	E:2-119	V-set	11 → 11.1 → 11.1.1
7	E	e8gomE2	E:120-245	C1-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors