ECODEvolutionary Classification of Protein Domains

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PDB 8HK1

ELECTRON MICROSCOPY21 chains25 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 1Splicing factor 3B subunit 1view chain

1 domain

e8hk111(1:490-1304)

Chain 3Splicing factor 3B subunit 3view chain

4 domains

e8hk131(3:1133-1217)e8hk132(3:404-441,3:773-1132)e8hk133(3:1-403)e8hk134(3:442-772)

Chain 4Splicing factor 3B subunit 4view chain

2 domains

e8hk141(4:90-181)e8hk142(4:11-89)

Chain 5Splicing factor 3B subunit 5view chain

1 domain

e8hk151(5:6-81)

Chain 6PHD finger-like domain-containing protein 5Aview chain

1 domain

e8hk161(6:7-91)

Chain aSmall nuclear ribonucleoprotein Sm D2view chain

1 domain

e8hk1a1(a:19-116)

Chain ASplicing factor 3A subunit 1view chain

1 domain

e8hk1A1(A:160-282)

Chain bSmall nuclear ribonucleoprotein Fview chain

1 domain

e8hk1b1(b:2-75)

Chain BSplicing factor 3A subunit 2view chain

1 domain

e8hk1B1(B:104-209)

Chain cSmall nuclear ribonucleoprotein Eview chain

1 domain

e8hk1c1(c:14-92)

Chain CSplicing factor 3A subunit 3view chain

1 domain

e8hk1C1(C:2-353)

Chain dSmall nuclear ribonucleoprotein Gview chain

1 domain

e8hk1d1(d:3-76)

Chain DHIV Tat-specific factor 1view chain

1 domain

e8hk1D1(D:127-253)

Chain eSmall nuclear ribonucleoprotein Sm D3view chain

1 domain

e8hk1e1(e:2-84)

Chain EATP-dependent RNA helicase DDX42view chain

2 domains

e8hk1E01(E:235-468)e8hk1E02(E:469-613)

Chain fSmall nuclear ribonucleoprotein-associated proteins B and B'view chain

1 domain

e8hk1f1(f:4-87)

Chain FU2 small nuclear ribonucleoprotein A'view chain

1 domain

e8hk1F1(F:2-163)

Chain gSmall nuclear ribonucleoprotein Sm D1view chain

1 domain

e8hk1g1(g:1-82)

Chain GU2 small nuclear ribonucleoprotein B''view chain

2 domains

e8hk1G1(G:88-99,G:149-225)e8hk1G2(G:6-87)

All Domains (25)

#	Chain	Domain ID	Range	Family	Classification
1	1	e8hk111	1:490-1304	PPP2R1A-like_HEAT	109 → 109.4 → 109.4.1
2	3	e8hk131	3:1133-1217	CPSF_A	101 → 101.1 → 101.1.1
3	3	e8hk132	3:404-441,3:773-1132	CPSF_A	5 → 5.1 → 5.1.4
4	3	e8hk133	3:1-403	MMS1_N	5 → 5.1 → 5.1.4
5	3	e8hk134	3:442-772	Beta-prop_RSE1_2nd	5 → 5.1 → 5.1.4
6	4	e8hk141	4:90-181	RRM_1	304 → 304.9 → 304.9.1
7	4	e8hk142	4:11-89	RRM_1	304 → 304.9 → 304.9.1
8	5	e8hk151	5:6-81	SF3b10	1106 → 1106.1 → 1106.1.1
9	6	e8hk161	6:7-91	PHF5	377 → 377.1 → 377.1.4
10	a	e8hk1a1	a:19-116	LSM	4 → 4.1 → 4.1.1
11	A	e8hk1A1	A:160-282	Surp	574 → 574.1 → 574.1.1
12	b	e8hk1b1	b:2-75	LSM	4 → 4.1 → 4.1.1
13	B	e8hk1B1	B:104-209	SF3A2	319 → 319.2 → 319.2.1
14	c	e8hk1c1	c:14-92	LSM	4 → 4.1 → 4.1.1
15	C	e8hk1C1	C:2-353	130.1.1.0	130 → 130.1 → 130.1.1
16	d	e8hk1d1	d:3-76	LSM	4 → 4.1 → 4.1.1
17	D	e8hk1D1	D:127-253	RRM_1	304 → 304.9 → 304.9.1
18	e	e8hk1e1	e:2-84	LSM	4 → 4.1 → 4.1.1
19	E	e8hk1E01	E:235-468	DEAD	2004 → 2004.1 → 2004.1.1
20	E	e8hk1E02	E:469-613	Helicase_C	2004 → 2004.1 → 2004.1.1
21	f	e8hk1f1	f:4-87	LSM	4 → 4.1 → 4.1.1
22	F	e8hk1F1	F:2-163	LRR_9	207 → 207.1 → 207.1.1
23	g	e8hk1g1	g:1-82	LSM	4 → 4.1 → 4.1.1
24	G	e8hk1G1	G:88-99,G:149-225	RRM_1	304 → 304.9 → 304.9.1
25	G	e8hk1G2	G:6-87	RRM_1	304 → 304.9 → 304.9.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors