ECODEvolutionary Classification of Protein Domains

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PDB 8J5O

ELECTRON MICROSCOPY36 chains33 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 0Beta subunit of light-harvesting 1view chain

1 domain

e8j5o01(0:7-55)

Chain 1Alpha subunit of light-harvesting 1view chain

1 domain

e8j5o11(1:1-42)

Chain 2Beta subunit of light-harvesting 1view chain

1 domain

e8j5o21(2:7-55)

Chain 3Alpha subunit of light-harvesting 1view chain

1 domain

e8j5o31(3:1-42)

Chain 4Beta subunit of light-harvesting 1view chain

1 domain

e8j5o41(4:7-55)

Chain 5Alpha subunit of light-harvesting 1view chain

1 domain

e8j5o51(5:1-42)

Chain 6Beta subunit of light-harvesting 1view chain

1 domain

e8j5o61(6:7-55)

Chain 7Alpha subunit of light-harvesting 1view chain

1 domain

e8j5o71(7:1-42)

Chain 8Beta subunit of light-harvesting 1view chain

1 domain

e8j5o81(8:7-55)

Chain 9Alpha subunit of light-harvesting 1view chain

1 domain

e8j5o91(9:1-42)

Chain AAlpha subunit of light-harvesting 1view chain

1 domain

e8j5oA1(A:1-42)

Chain BBeta subunit of light-harvesting 1view chain

1 domain

e8j5oB1(B:7-55)

Chain CMULTIHEME_CYTC DOMAIN-CONTAINING PROTEINview chain

1 domain

e8j5oC1(C:89-303)

Chain DAlpha subunit of light-harvesting 1view chain

1 domain

e8j5oD1(D:1-42)

Chain EBeta subunit of light-harvesting 1view chain

1 domain

e8j5oE1(E:7-55)

Chain FAlpha subunit of light-harvesting 1view chain

1 domain

e8j5oF1(F:1-42)

Chain GBeta subunit of light-harvesting 1view chain

1 domain

e8j5oG1(G:7-55)

Chain HAlpha subunit of light-harvesting 1view chain

1 domain

e8j5oH1(H:1-42)

Chain IBeta subunit of light-harvesting 1view chain

1 domain

e8j5oI1(I:7-55)

Chain JAlpha subunit of light-harvesting 1view chain

1 domain

e8j5oJ1(J:1-42)

Chain KBeta subunit of light-harvesting 1view chain

1 domain

e8j5oK1(K:7-55)

Chain LReaction center protein L chainview chain

1 domain

e8j5oL1(L:40-305)

Chain MReaction center protein M chainview chain

1 domain

e8j5oM1(M:32-289)

Chain NAlpha subunit of light-harvesting 1view chain

1 domain

e8j5oN1(N:1-42)

Chain OBeta subunit of light-harvesting 1view chain

1 domain

e8j5oO1(O:7-55)

Chain PAlpha subunit of light-harvesting 1view chain

1 domain

e8j5oP1(P:1-42)

Chain QBeta subunit of light-harvesting 1view chain

1 domain

e8j5oQ1(Q:7-55)

Chain RAlpha subunit of light-harvesting 1view chain

1 domain

e8j5oR1(R:1-42)

Chain SBeta subunit of light-harvesting 1view chain

1 domain

e8j5oS1(S:7-55)

Chain TAlpha subunit of light-harvesting 1view chain

1 domain

e8j5oT1(T:1-42)

Chain UBeta subunit of light-harvesting 1view chain

1 domain

e8j5oU1(U:7-55)

Chain VAlpha subunit of light-harvesting 1view chain

1 domain

e8j5oV1(V:1-42)

Chain WBeta subunit of light-harvesting 1view chain

1 domain

e8j5oW1(W:7-55)

All Domains (33)

#	Chain	Domain ID	Range	Family	Classification
1	0	e8j5o01	0:7-55	LHC	5074 → 5074.1 → 5074.1.1
2	1	e8j5o11	1:1-42	5074.1.1.0	5074 → 5074.1 → 5074.1.1
3	2	e8j5o21	2:7-55	LHC	5074 → 5074.1 → 5074.1.1
4	3	e8j5o31	3:1-42	5074.1.1.0	5074 → 5074.1 → 5074.1.1
5	4	e8j5o41	4:7-55	LHC	5074 → 5074.1 → 5074.1.1
6	5	e8j5o51	5:1-42	5074.1.1.0	5074 → 5074.1 → 5074.1.1
7	6	e8j5o61	6:7-55	LHC	5074 → 5074.1 → 5074.1.1
8	7	e8j5o71	7:1-42	5074.1.1.0	5074 → 5074.1 → 5074.1.1
9	8	e8j5o81	8:7-55	LHC	5074 → 5074.1 → 5074.1.1
10	9	e8j5o91	9:1-42	5074.1.1.0	5074 → 5074.1 → 5074.1.1
11	A	e8j5oA1	A:1-42	5074.1.1.0	5074 → 5074.1 → 5074.1.1
12	B	e8j5oB1	B:7-55	LHC	5074 → 5074.1 → 5074.1.1
13	C	e8j5oC1	C:89-303	CytoC_RC	139 → 139.3 → 139.3.1
14	D	e8j5oD1	D:1-42	5074.1.1.0	5074 → 5074.1 → 5074.1.1
15	E	e8j5oE1	E:7-55	LHC	5074 → 5074.1 → 5074.1.1
16	F	e8j5oF1	F:1-42	5074.1.1.0	5074 → 5074.1 → 5074.1.1
17	G	e8j5oG1	G:7-55	LHC	5074 → 5074.1 → 5074.1.1
18	H	e8j5oH1	H:1-42	5074.1.1.0	5074 → 5074.1 → 5074.1.1
19	I	e8j5oI1	I:7-55	LHC	5074 → 5074.1 → 5074.1.1
20	J	e8j5oJ1	J:1-42	5074.1.1.0	5074 → 5074.1 → 5074.1.1
21	K	e8j5oK1	K:7-55	LHC	5074 → 5074.1 → 5074.1.1
22	L	e8j5oL1	L:40-305	Photo_RC	5037 → 5037.1 → 5037.1.1
23	M	e8j5oM1	M:32-289	Photo_RC	5037 → 5037.1 → 5037.1.1
24	N	e8j5oN1	N:1-42	5074.1.1.0	5074 → 5074.1 → 5074.1.1
25	O	e8j5oO1	O:7-55	LHC	5074 → 5074.1 → 5074.1.1
26	P	e8j5oP1	P:1-42	5074.1.1.0	5074 → 5074.1 → 5074.1.1
27	Q	e8j5oQ1	Q:7-55	LHC	5074 → 5074.1 → 5074.1.1
28	R	e8j5oR1	R:1-42	5074.1.1.0	5074 → 5074.1 → 5074.1.1
29	S	e8j5oS1	S:7-55	LHC	5074 → 5074.1 → 5074.1.1
30	T	e8j5oT1	T:1-42	5074.1.1.0	5074 → 5074.1 → 5074.1.1
31	U	e8j5oU1	U:7-55	LHC	5074 → 5074.1 → 5074.1.1
32	V	e8j5oV1	V:1-42	5074.1.1.0	5074 → 5074.1 → 5074.1.1
33	W	e8j5oW1	W:7-55	LHC	5074 → 5074.1 → 5074.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors