ECODEvolutionary Classification of Protein Domains

Home/PDB

PDB 8KDE

18 chains16 ECOD domains

View in RCSB PDB

3D Structure(domains colored, ligands/nucleic acids shown)

Loading viewer...

Domains by Chain

Chain APhotosystem II protein D1view chain

1 domain

e8kdeA1(A:9-344)

Chain BPhotosystem II CP47 reaction center proteinview chain

2 domains

e8kdeB01(B:1-258)e8kdeB02(B:329-444)

Chain CPhotosystem II CP43 reaction center proteinview chain

1 domain

e8kdeC1(C:13-461)

Chain DPhotosystem II D2 proteinview chain

1 domain

e8kdeD1(D:5-352)

Chain ECytochrome b559 subunit alphaview chain

1 domain

e8kdeE1(E:7-82)

Chain FCytochrome b559 subunit betaview chain

1 domain

e8kdeF1(F:14-44)

Chain HPhotosystem II reaction center protein Hview chain

1 domain

e8kdeH1(H:19-86)

Chain IPhotosystem II reaction center protein Iview chain

1 domain

e8kdeI1(I:1-35)

Chain KPhotosystem II reaction center protein Kview chain

1 domain

e8kdeK1(K:10-46)

Chain LPhotosystem II reaction center protein Lview chain

1 domain

e8kdeL1(L:4-38)

Chain MPhotosystem II reaction center protein Mview chain

1 domain

e8kdeM1(M:3-32)

Chain TPhotosystem II reaction center protein Tview chain

1 domain

e8kdeT1(T:1-30)

Chain VPhotosystem II reaction center protein Ycf12view chain

1 domain

e8kdeV1(V:2-33)

Chain XUncharacterized proteinview chain

1 domain

e8kdeX1(X:64-98)

Chain ZPhotosystem II reaction center protein Zview chain

1 domain

e8kdeZ1(Z:1-61)

All Domains (16)

#	Chain	Domain ID	Range	Family	Classification
1	A	e8kdeA1	A:9-344	Photo_RC	5037 → 5037.1 → 5037.1.1
2	B	e8kdeB01	B:1-258	PSII	5075 → 5075.1 → 5075.1.1
3	B	e8kdeB02	B:329-444	PSII	3744 → 3744.1 → 3744.1.1
4	C	e8kdeC1	C:13-461	PSII	5075 → 5075.1 → 5075.1.1
5	D	e8kdeD1	D:5-352	Photo_RC	5037 → 5037.1 → 5037.1.1
6	E	e8kdeE1	E:7-82	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
7	F	e8kdeF1	F:14-44	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
8	H	e8kdeH1	H:19-86	PsbH	5032 → 5032.1 → 5032.1.1
9	I	e8kdeI1	I:1-35	PsbI	5035 → 5035.1 → 5035.1.1
10	K	e8kdeK1	K:10-46	PsbK	5034 → 5034.1 → 5034.1.1
11	L	e8kdeL1	L:4-38	PsbL	5030 → 5030.1 → 5030.1.1
12	M	e8kdeM1	M:3-32	PsbM	5033 → 5033.1 → 5033.1.1
13	T	e8kdeT1	T:1-30	PsbT	3390 → 3390.1 → 3390.1.1
14	V	e8kdeV1	V:2-33	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
15	X	e8kdeX1	X:64-98	PsbX	3493 → 3493.1 → 3493.1.1
16	Z	e8kdeZ1	Z:1-61	Ycf9	5044 → 5044.1 → 5044.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors